Movatterモバイル変換


[0]ホーム

URL:


Skip to content

Navigation Menu

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

Sign up
#

10x-genomics

Here are 24 public repositories matching this topic...

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

  • UpdatedMar 11, 2025
  • Nextflow

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

  • UpdatedApr 20, 2021
  • R

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

  • UpdatedFeb 8, 2019

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

  • UpdatedMar 14, 2025
  • Nextflow

Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)

  • UpdatedMay 6, 2019
  • R

Standalone tool and library allowing to work with barcoded linked-reads

  • UpdatedDec 7, 2024
  • C++

Collection of tools and resources for linked-reads

  • UpdatedDec 17, 2024

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

  • UpdatedAug 25, 2023
  • Nextflow

Perform Visium Standard Definition (SD) spot deconvolution into putative single cells using distance-based gene clustering and cell type formulation.

  • UpdatedMar 11, 2025
  • Jupyter Notebook

CWL toolkit for single-cell sequencing data analysis

  • UpdatedNov 11, 2022
  • Common Workflow Language

R package: {rfca} Random forest-based cell annotation methods for scRNAseq analysis. {rfca} contains methods which identifies cell types using machine learning trained on a diversity of cell types, without the need for a labelled training dataset. It also allows you to train your own cell prediction models with your own labels (cell type, subtyp…

  • UpdatedOct 7, 2020
  • R
neutronstar

De novo assembly pipeline for 10X linked-reads using Supernova

  • UpdatedSep 15, 2020
  • Nextflow

R script built on Seurat objects to analyze 10X single-cell expression data

  • UpdatedDec 14, 2021
  • R

Pipeline for SV detection using 10X genomics data

  • UpdatedOct 8, 2018
  • Python

Preliminary study to figure out how many larval gonads are needed for RNA-Seq

  • UpdatedAug 5, 2020
  • Jupyter Notebook

Cloupe reader

  • UpdatedJan 13, 2025
  • Python

adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data

  • UpdatedJun 21, 2019
  • C++

Scripts developed to work with 10x Genomics sequencing results

  • UpdatedSep 20, 2017
  • R

Paper list of single cell omics

  • UpdatedAug 27, 2019

Improve this page

Add a description, image, and links to the10x-genomics topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the10x-genomics topic, visit your repo's landing page and select "manage topics."

Learn more


[8]ページ先頭

©2009-2025 Movatter.jp