1000 Genomes Project Metadata R Package

• UpdatedDec 21, 2022
• R

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

• UpdatedMar 16, 2025
• Cuda

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

• UpdatedJul 30, 2024
• Jupyter Notebook

GTM and t-SNE classification and clustering of 1000 Genomes Project populations

• UpdatedFeb 18, 2019
• Python

📙 Explore 1000 Genomes variant data with JavaScript.

• UpdatedSep 14, 2018
• JavaScript

A PBWT-based light index for UK Biobank scale genotype data.

• UpdatedMar 17, 2025
• C++

GWAS Pre-Processing Pipeline

• UpdatedNov 6, 2019
• Python

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

• UpdatedDec 5, 2024
• Shell

Find risk snp in the LD region of GWAS snps by convolutional neural network

• UpdatedFeb 28, 2019
• Python

Predicting 1000 Genomes population using PCA and a random forest classifier

• UpdatedAug 1, 2018
• Jupyter Notebook

Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

• UpdatedApr 8, 2018
• Python

Map 1000genomes location to a worldmap

• UpdatedFeb 22, 2021
• HTML

a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing

• UpdatedMar 10, 2025
• Jupyter Notebook

The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

• UpdatedMay 4, 2017
• Python

Concordance Validation across Experiments

• UpdatedNov 21, 2017

A Python script that generate population genotype frequency file from 1000G data

• UpdatedMay 6, 2022
• Python

echoverse module: LD downloading and processing

• UpdatedMay 10, 2024
• R

An extendable parser for vcf files written in C++

• UpdatedApr 21, 2017
• C++

Keep up to date with ONT R10 files from 1KG

• UpdatedDec 5, 2024
• Python

Visualizing Linkage Disequilibrium using 1000 Genomes Data

• UpdatedJul 3, 2022
• R