I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

• Metagenomics cleanup pipeline
• Get Illumina Reads

📦 Some tools are available via Bioconda :

🧬 🚀seqfu	⛰️bamtocov	🖌️dadaist2	🛠️qax
Fast toolkit for FASTX manipulation and inspection	to extract coverage tracks from BAM files	to analyze 16s/ITS from reads to R	utilities for Qiime2 artifacts

📖 I use GitHub also for training material

I'm usingMastodon

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1. seqfu2seqfu2Public

   🚀 seqfu - Sequece Fastx Utilities

   Nim 113 9

2. covtobedcovtobedPublic

   ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

   C++ 43 3

3. bamtocovbamtocovPublic

   🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

   Nim 61 6

4. ganganPublic

   📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

   Python 35 6

5. learn_bashlearn_bashPublic

   Toy files and training material to introduce Linux to molecular biologists

   Python 22 4

6. nextflow-examplenextflow-examplePublic

   A simple DSL2 workflow: tutorial

   Nextflow 25 8