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Genome annotation data analysis and management implemented in pure Python
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standage/tag
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Computational biology is 90% text formatting and ID cross-referencing!
-- discouraged graduate students everywhere
tag is a free open-source software package for analyzing genome annotation data.
# Compute number of exons per geneimporttagreader=tag.GFF3Reader(infilename='/data/genomes/mybug.gff3.gz')forgeneintag.select.features(reader,type='gene'):exons= [featforfeatingeneiffeat.type==exon]print('num exons:',len(exons))
To install the most recent stable release executepip install tag from your terminal.Full installation instructions and project documentation are available athttps://tag.readthedocs.io.
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