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Commit0cc102e

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Add devcontainer spec
1 parentee696af commit0cc102e

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‎.devcontainer/Dockerfile‎

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FROM continuumio/miniconda3
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# Options for common setup script
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ARG INSTALL_ZSH="true"
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ARG UPGRADE_PACKAGES="false"
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ARG USERNAME=vscode
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ARG USER_UID=1000
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ARG USER_GID=$USER_UID
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# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies.
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COPY .devcontainer/library-scripts/*.sh /tmp/library-scripts/
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RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
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&& /bin/bash /tmp/library-scripts/common-debian.sh"${INSTALL_ZSH}""${USERNAME}""${USER_UID}""${USER_GID}""${UPGRADE_PACKAGES}" \
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&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts
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# Copy environment.yml (if found) to a temp locaition so we update the environment. Also
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# copy "noop.txt" so the COPY instruction does not fail if no environment.yml exists.
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COPY environment.yml* .devcontainer/noop.txt /tmp/conda-tmp/
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RUN if [ -f"/tmp/conda-tmp/environment.yml" ]; then /opt/conda/bin/conda env update -n base -f /tmp/conda-tmp/environment.yml; fi \
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&& rm -rf /tmp/conda-tmp
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# Install pylint
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RUN /opt/conda/bin/pip install pylint
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# [Optional] Uncomment this section to install additional OS packages.
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# RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
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# && apt-get -y install --no-install-recommends <your-package-list-here>
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‎.devcontainer/devcontainer.json‎

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// For format details, see https://aka.ms/vscode-remote/devcontainer.json or this file's README at:
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// https://github.com/microsoft/vscode-dev-containers/tree/v0.134.1/containers/python-3-miniconda
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{
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"name":"Python 3 - Miniconda",
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"context":"..",
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"dockerFile":"Dockerfile",
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// Set *default* container specific settings.json values on container create.
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"settings": {
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"terminal.integrated.shell.linux":"/bin/bash",
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"python.pythonPath":"/opt/conda/bin/python",
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"python.linting.enabled":true,
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"python.linting.pylintEnabled":true,
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"python.linting.pylintPath":"/opt/conda/bin/pylint"
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},
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// Add the IDs of extensions you want installed when the container is created.
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"extensions": [
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"ms-python.python"
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]
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// Use 'forwardPorts' to make a list of ports inside the container available locally.
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// "forwardPorts": [],
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// Use 'postCreateCommand' to run commands after the container is created.
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// "postCreateCommand": "python --version",
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// Uncomment to connect as a non-root user. See https://aka.ms/vscode-remote/containers/non-root.
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// "remoteUser": "vscode"
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}
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#!/usr/bin/env bash
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#-------------------------------------------------------------------------------------------------------------
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# Copyright (c) Microsoft Corporation. All rights reserved.
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# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information.
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#-------------------------------------------------------------------------------------------------------------
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# Syntax: ./common-debian.sh [install zsh flag] [username] [user UID] [user GID] [upgrade packages flag]
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INSTALL_ZSH=${1:-"true"}
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USERNAME=${2:-"vscode"}
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USER_UID=${3:-1000}
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USER_GID=${4:-1000}
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UPGRADE_PACKAGES=${5:-"true"}
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set -e
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if ["$(id -u)"-ne 0 ];then
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echo -e'Script must be run a root. Use sudo, su, or add "USER root" to your Dockerfile before running this script.'
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exit 1
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fi
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# Treat a user name of "none" as root
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if ["${USERNAME}"="none" ]|| ["${USERNAME}"="root" ];then
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USERNAME=root
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USER_UID=0
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USER_GID=0
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fi
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# Load markers to see which steps have already run
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MARKER_FILE="/usr/local/etc/vscode-dev-containers/common"
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if [-f"${MARKER_FILE}" ];then
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echo"Marker file found:"
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cat"${MARKER_FILE}"
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source"${MARKER_FILE}"
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fi
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# Ensure apt is in non-interactive to avoid prompts
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export DEBIAN_FRONTEND=noninteractive
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# Function to call apt-get if needed
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apt-get-update-if-needed()
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{
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if [!-d"/var/lib/apt/lists" ]|| ["$(ls /var/lib/apt/lists/| wc -l)"="0" ];then
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echo"Running apt-get update..."
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apt-get update
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else
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echo"Skipping apt-get update."
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fi
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}
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# Run install apt-utils to avoid debconf warning then verify presence of other common developer tools and dependencies
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if ["${PACKAGES_ALREADY_INSTALLED}"!="true" ];then
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apt-get-update-if-needed
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PACKAGE_LIST="apt-utils\
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git\
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openssh-client\
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less\
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iproute2\
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procps\
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curl\
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wget\
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unzip\
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nano\
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jq\
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lsb-release\
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ca-certificates\
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apt-transport-https\
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dialog\
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gnupg2\
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libc6\
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libgcc1\
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libgssapi-krb5-2\
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libicu[0-9][0-9]\
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liblttng-ust0\
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libstdc++6\
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zlib1g\
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locales\
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sudo"
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# Install libssl1.1 if available
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if [[!-z$(apt-cache --names-only search ^libssl1.1$) ]];then
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PACKAGE_LIST="${PACKAGE_LIST} libssl1.1"
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fi
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# Install appropriate version of libssl1.0.x if available
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LIBSSL=$(dpkg-query -f'${db:Status-Abbrev}\t${binary:Package}\n' -W'libssl1\.0\.?'2>&1||echo'')
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if ["$(echo"$LIBSSL"| grep -o'libssl1\.0\.[0-9]:'| uniq| sort| wc -l)"-eq 0 ];then
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if [[!-z$(apt-cache --names-only search ^libssl1.0.2$) ]];then
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# Debian 9
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PACKAGE_LIST="${PACKAGE_LIST} libssl1.0.2"
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elif [[!-z$(apt-cache --names-only search ^libssl1.0.0$) ]];then
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# Ubuntu 18.04, 16.04, earlier
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PACKAGE_LIST="${PACKAGE_LIST} libssl1.0.0"
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fi
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fi
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echo"Packages to verify are installed:${PACKAGE_LIST}"
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apt-get -y install --no-install-recommends${PACKAGE_LIST}2>>( grep -v'debconf: delaying package configuration, since apt-utils is not installed'>&2)
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PACKAGES_ALREADY_INSTALLED="true"
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fi
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# Get to latest versions of all packages
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if ["${UPGRADE_PACKAGES}"="true" ];then
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apt-get-update-if-needed
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apt-get -y upgrade --no-install-recommends
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apt-get autoremove -y
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fi
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# Ensure at least the en_US.UTF-8 UTF-8 locale is available.
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# Common need for both applications and things like the agnoster ZSH theme.
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if ["${LOCALE_ALREADY_SET}"!="true" ];then
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echo"en_US.UTF-8 UTF-8">> /etc/locale.gen
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locale-gen
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LOCALE_ALREADY_SET="true"
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fi
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# Create or update a non-root user to match UID/GID - see https://aka.ms/vscode-remote/containers/non-root-user.
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if id -u$USERNAME> /dev/null2>&1;then
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# User exists, update if needed
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if ["$USER_GID"!="$(id -G$USERNAME)" ];then
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groupmod --gid$USER_GID$USERNAME
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usermod --gid$USER_GID$USERNAME
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fi
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if ["$USER_UID"!="$(id -u$USERNAME)" ];then
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usermod --uid$USER_UID$USERNAME
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fi
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else
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# Create user
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groupadd --gid$USER_GID$USERNAME
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useradd -s /bin/bash --uid$USER_UID --gid$USER_GID -m$USERNAME
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fi
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# Add add sudo support for non-root user
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if ["${EXISTING_NON_ROOT_USER}"!="${USERNAME}" ];then
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echo$USERNAME ALL=\(root\) NOPASSWD:ALL> /etc/sudoers.d/$USERNAME
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chmod 0440 /etc/sudoers.d/$USERNAME
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EXISTING_NON_ROOT_USER="${USERNAME}"
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fi
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# Ensure ~/.local/bin is in the PATH for root and non-root users for bash. (zsh is later)
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if ["${DOT_LOCAL_ALREADY_ADDED}"!="true" ];then
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echo"export PATH=\$PATH:\$HOME/.local/bin"| tee -a /root/.bashrc>> /home/$USERNAME/.bashrc
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chown$USER_UID:$USER_GID /home/$USERNAME/.bashrc
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DOT_LOCAL_ALREADY_ADDED="true"
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fi
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# Optionally install and configure zsh
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if ["${INSTALL_ZSH}"="true" ]&& [!-d"/root/.oh-my-zsh" ]&& ["${ZSH_ALREADY_INSTALLED}"!="true" ];then
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apt-get-update-if-needed
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apt-get install -y zsh
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curl -fsSLo- https://raw.githubusercontent.com/robbyrussell/oh-my-zsh/master/tools/install.sh| bash2>&1
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echo"export PATH=\$PATH:\$HOME/.local/bin">> /root/.zshrc
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if ["${USERNAME}"!="root" ];then
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cp -fR /root/.oh-my-zsh /home/$USERNAME
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cp -f /root/.zshrc /home/$USERNAME
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sed -i -e"s/\/root\/.oh-my-zsh/\/home\/$USERNAME\/.oh-my-zsh/g" /home/$USERNAME/.zshrc
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chown -R$USER_UID:$USER_GID /home/$USERNAME/.oh-my-zsh /home/$USERNAME/.zshrc
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fi
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ZSH_ALREADY_INSTALLED="true"
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fi
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# Write marker file
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mkdir -p"$(dirname"${MARKER_FILE}")"
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echo -e"\
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PACKAGES_ALREADY_INSTALLED=${PACKAGES_ALREADY_INSTALLED}\n\
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LOCALE_ALREADY_SET=${LOCALE_ALREADY_SET}\n\
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EXISTING_NON_ROOT_USER=${EXISTING_NON_ROOT_USER}\n\
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DOT_LOCAL_ALREADY_ADDED=${DOT_LOCAL_ALREADY_ADDED}\n\
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ZSH_ALREADY_INSTALLED=${ZSH_ALREADY_INSTALLED}">"${MARKER_FILE}"
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‎.devcontainer/noop.txt‎

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This file is copied into the container along with environment.yml* from the
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parent folder. This is done to prevent the Dockerfile COPY instruction from
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failing if no environment.yml is found.

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