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A hybrid approach to find spatially relevant marker genes in image based spatial transcriptomics data
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phipsonlab/jazzPanda
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The jazzPanda package contains functions to find marker genesbased on the spatial coordinates for imaging-based spatial transcriptomicstechnologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.
To install jazzPanda from Bioconductor, use the following commands:
if (!requireNamespace("BiocManager",quietly=TRUE)) install.packages("BiocManager")BiocManager::install("jazzPanda")
To install jazzPanda from github, use the following commands:
library(devtools)devtools::install_github("phipsonlab/jazzPanda")
In order to view the vignette for jazzPanda use the following command:
browseVignettes("jazzPanda")