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@phac-nml

National Microbiology Laboratory

Popular repositoriesLoading

  1. staramrstaramrPublic

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 142 28

  2. mob-suitemob-suitePublic

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 140 32

  3. ecoli_serotypingecoli_serotypingPublic

    In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping

    Python 53 11

  4. refseq_masherrefseq_masherPublic

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 41 4

  5. iridairidaPublic

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  6. sistr_cmdsistr_cmdPublic

    SISTR (Salmonella In Silico Typing Resource) command-line tool

    Python 27 9

Repositories

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Showing 10 of 154 repositories
  • fastmatchirida Public

    Quickly refines a reference set of samples based on distance.

    phac-nml/fastmatchirida’s past year of commit activity
    Nextflow 1MIT0 0 1 UpdatedApr 2, 2025
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 9Apache-2.0 3 16 12 UpdatedApr 2, 2025
  • typingQC Public

    Genotyping Quality Control (typingQC)

    phac-nml/typingQC’s past year of commit activity
    Nextflow0MIT0 0 1 UpdatedApr 2, 2025
  • ArborView Public

    A way to visualize beautiful phylogenetic trees alongside contextual data.

    phac-nml/ArborView’s past year of commit activity
    HTML 10 1 1 UpdatedApr 2, 2025
  • gasnomenclature Public

    Nomenclature assignment pipeline

    phac-nml/gasnomenclature’s past year of commit activity
    Nextflow0MIT 1 3 0 UpdatedApr 2, 2025
  • genomic_address_service Public

    Package for clustering sequences de novo and assignment to existing nomenclature

    phac-nml/genomic_address_service’s past year of commit activity
    Python 1Apache-2.0 4 13 2 UpdatedApr 2, 2025
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 17MIT 3 24 4 UpdatedApr 2, 2025
  • nf-ViralMutations Public

    Generic pipeline for calling mutations against a viral reference genome

    phac-nml/nf-ViralMutations’s past year of commit activity
    Nextflow0Apache-2.00 3 0 UpdatedApr 1, 2025
  • phac-nml/gasclustering’s past year of commit activity
    Nextflow0MIT0 3 1 UpdatedMar 31, 2025
  • profile_dists Public

    Profile Dists: Convenient package for comparing genetic similarity of samples based on allelic profiles

    phac-nml/profile_dists’s past year of commit activity
    Python 2Apache-2.0 1 6 0 UpdatedMar 31, 2025

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