Repositories list

• physionet-build

  Public
  The new PhysioNet platform.

  physionet

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •24•60•425•30•UpdatedMar 29, 2025Mar 29, 2025

• mimic-code

  Public
  MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

  icuphysionetmimic-iii+ 1critical-care

  Jupyter Notebook

  •

  MIT License

  •1.6k•2.8k•255•14•UpdatedMar 27, 2025Mar 27, 2025

• django-static-mathjax

  Public
  MathJax package for Django

  Python

  •

  Apache License 2.0

  •0•0•0•0•UpdatedMar 14, 2025Mar 14, 2025

• mimic-iv-ecg-ve

  Public
  Vector Embedding Pipeline for MIMIC-IV-ECG

  Python

  •

  MIT License

  •0•0•0•0•UpdatedMar 8, 2025Mar 8, 2025

• wfdb-python

  Public
  Native Python WFDB package

  pythonecgphysionet+ 2wfdbekg

  Jupyter Notebook

  •

  MIT License

  •312•777•79•10•UpdatedFeb 4, 2025Feb 4, 2025

• eicu-code

  Public
  Code and website related to the eICU Collaborative Research Database

  healthcarephysionetehr+ 3eicu-crdmimicdatabase

  Jupyter Notebook

  •

  MIT License

  •223•336•98•9•UpdatedDec 19, 2024Dec 19, 2024

• license-and-dua

  Public
  The PhysioNet Data Use Agreement and License

  duaphysionetlicense+ 1agreement

  MIT License

  •13•7•10•1•UpdatedOct 29, 2024Oct 29, 2024

• mimic-iv-demo-omop

  Public
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

  Python

  •

  Apache License 2.0

  •26•1•0•1•UpdatedOct 29, 2024Oct 29, 2024

• aws-physionet-open-data

  Public
  Script for generating the PhysioNet pages in the AWS Open Data Registry

  Python

  •

  MIT License

  •0•1•0•1•UpdatedOct 8, 2024Oct 8, 2024

• sccm-datathon

  Public
  Resources for the Society of Critical Care Medicine (SCCM) Datathon

  icusccmcritical-care+ 3datathonmimiceicu

  Jupyter Notebook

  •

  MIT License

  •9•23•0•2•UpdatedSep 24, 2024Sep 24, 2024

• plibflac

  Public
  Read and write FLAC audio files in Python

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•UpdatedSep 23, 2024Sep 23, 2024

• bst209-2024

  Public
  Course materials for BST209

  HTML

  •

  MIT License

  •1•3•0•0•UpdatedAug 13, 2024Aug 13, 2024

• mimic-website

  Public
  Website for the MIMIC Critical Care Database (currently version MIMIC-III)

  icuphysionetehr+ 2mimic-iiimimic

  CSS

  •

  MIT License

  •114•113•44•4•UpdatedJun 26, 2024Jun 26, 2024

• hack-aotearoa

  Public
  Sample code for Hack Aotearoa 2023

  Jupyter Notebook

  •

  MIT License

  •6•10•0•2•UpdatedJun 17, 2024Jun 17, 2024

• bidmc-datathon

  Public
  Materials for the BIDMC datathon (Sat 29 Feb 2020)

  bostoneicu-crddatathon+ 3mimiceicubidmc

  Jupyter Notebook

  •

  MIT License

  •3•13•0•2•UpdatedJun 17, 2024Jun 17, 2024

• datathon-package

  Public
  Pip installable package containing helper functions for datathons

  Python

  •

  MIT License

  •1•5•0•2•UpdatedJun 17, 2024Jun 17, 2024

• the-bias-glossary

  Public
  0•1•0•0•UpdatedApr 25, 2024Apr 25, 2024

• mimic-omop

  Public
  Mapping the MIMIC-III database to the OMOP schema

  data-modelmimic-iiiomop

  PLpgSQL

  •

  MIT License

  •48•132•40•6•UpdatedMar 17, 2024Mar 17, 2024

• datathon-gossis

  Public
  Resources for the GOSSIS datathon in Pittsburgh

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•UpdatedFeb 27, 2024Feb 27, 2024

• citation-tracker

  Public
  Tools for tracking citations to MIMIC, PhysioNet etc.

  Jupyter Notebook

  •

  MIT License

  •2•4•1•0•UpdatedDec 10, 2023Dec 10, 2023

• cwmed

  Public
  A Python package that facilities the conversion of clinical terminology between two different coding systems for interoperability.

  Python

  •

  MIT License

  •0•1•0•0•UpdatedOct 18, 2023Oct 18, 2023

• waveform-annotation

  Public
  Platform for annotating physiological waveform data.

  Python

  •4•16•2•2•UpdatedOct 10, 2023Oct 10, 2023

• mimic-echo

  Public
  Structured data from echocardiogram reports

  MIT License

  •0•0•0•0•UpdatedSep 4, 2023Sep 4, 2023

• scrub_faces

  Public
  Scrub/blur faces in a dataset of images.

  Python

  •

  MIT License

  •0•0•0•0•UpdatedJul 21, 2023Jul 21, 2023

• physionet

  Public
  A collection of tools for working with the PhysioNet repository.

  Python

  •

  MIT License

  •17•70•97•0•UpdatedJun 11, 2023Jun 11, 2023

• lcp-website

  Public
  Website for the LCP Laboratoryhttps://lcp.mit.edu

  HTML

  •0•1•2•2•UpdatedMay 1, 2023May 1, 2023

• mimic-iv-datathon

  Public
  Jupyter Notebook

  •0•1•0•0•UpdatedApr 24, 2023Apr 24, 2023

• vancomycin-nephrotoxicity

  Public
  Study in eICU-CRD about vancomycin and associated nephrotoxicity

  Jupyter Notebook

  •5•10•2•0•UpdatedMar 3, 2023Mar 3, 2023

• critical-data

  Public
  Website for critical-data

  CSS

  •

  MIT License

  •6•8•3•1•UpdatedJan 26, 2023Jan 26, 2023

• metaann

  Public
  Collaborative labelling of events in physiological waveforms

  C

  •

  GNU General Public License v2.0

  •0•0•0•0•UpdatedSep 29, 2022Sep 29, 2022