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[WIP] A simple MSM engine#518

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@jhprinz
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Useful to simulate OPS given an MSM matrix. There is a notebook that explains it.

Still experimental

@jhprinzjhprinz added this to the1.x milestoneJul 11, 2016
@jchodera
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Awesome, thanks!

@jhprinz
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Little updates. It works in memory now and has some helpers that make it faster...

jhprinzand others added30 commitsDecember 8, 2016 11:16
# Conflicts:#docs/netcdfplus/stores.rst#openpathsampling/netcdfplus/proxy.py#openpathsampling/pathsimulator.py
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@jhprinz@jchodera@dwhswenson

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