Search results

[Q]can plotpup.py show log2FC

Status: Open.

#165 In open2c/coolpuppy;

·BenxiaHu openedon Mar 16, 2025

[Q] The same command produces different .clpy results

Status: Open.

#164 In open2c/coolpuppy;

·Miracle-Yao openedon Mar 13, 2025

Dividing pileups with multiple categories

Status: Open.

#163 In open2c/coolpuppy;

·rikrdo89 openedon Mar 4, 2025

Values <1 forrescale_flank causeassertion error when including central pixel score

Status: Open.

#161 In open2c/coolpuppy;

·rikrdo89 openedon Mar 2, 2025

[Q] Centromere Trans Pileup

Status: Open.

#157 In open2c/coolpuppy;

·LucasMcNU openedon Oct 29, 2024

[Q] How to test significance of change between pileups?

Status: Open.

#148 In open2c/coolpuppy;

·AudreyBaguette openedon Jun 3, 2024

pu.pileupsWithControl might skip some pile-up regions or raise vaguedomain_score not in dict2 AssertionError

Status: Open.

#146 In open2c/coolpuppy;

·nvaulin openedon May 25, 2024

[Q] Setting --mindist parameter as 0, but not contain all number of loop(input loop.bedpe)

Status: Open.

#145 In open2c/coolpuppy;

·Miracle-Yao openedon May 3, 2024

To access a value by position, useser.iloc[pos] chroffset = self.clr.offset(region[0])

Status: Open.

#144 In open2c/coolpuppy;

·jiangshan529 openedon Apr 15, 2024

Extracting locus strength scores for loops

Status: Open.

#143 In open2c/coolpuppy;

·NMaziak openedon Mar 28, 2024

[Q] Question on normalization between 2 conditions before coolpups

Status: Open.

#139 In open2c/coolpuppy;

·Lucas446 openedon Dec 9, 2023

plotpup.py TypeError: __init__() got an unexpected keyword argument 'add_all'

Status: Open.

#73 In open2c/coolpuppy;

·odovgusha openedon Jun 10, 2022