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Docker build fails due to hardcoded Clear Linux version

Status: Open.

#367 In mskcc/vcf2maf;

·maciejmotyka openedon Feb 11, 2025

Any possibility to add--retain-all-info,--retain-all-fmt and--retain-all-ann arguments?

Status: Open.

#365 In mskcc/vcf2maf;

·zhuxr11 openedon Oct 25, 2024

use own fasta and gff files to annotate VCF file

Status: Open.

#364 In mskcc/vcf2maf;

·DayTimeMouse openedon Oct 15, 2024

ERROR: You're either using an outdated samtools, or --ref-fasta is not the same genome build

Status: Open.

#362 In mskcc/vcf2maf;

·liuyang2006 openedon Sep 28, 2024

Is there any T2T chm13 genome support?

Status: Open.

#361 In mskcc/vcf2maf;

·liuyang2006 openedon Sep 28, 2024

ERROR: No cache found for homo_sapiens, version 93

Status: Open.

#360 In mskcc/vcf2maf;

·Olsennnnn openedon Sep 12, 2024

Running vcf2maf WARNING: No genotype column for NORMAL in VCF! WARNING: Unrecognized biotype "protein_coding_CDS_not_defined". Assigning lowest priority!

Status: Open.

#359 In mskcc/vcf2maf;

·tanayb001 openedon Aug 1, 2024

maf2maf issue

Status: Open.

#358 In mskcc/vcf2maf;

·parvathisudha openedon Jul 11, 2024

traying to make a maf from an already annotated vcf

Status: Open.

#354 In mskcc/vcf2maf;

·javierAPC openedon Apr 18, 2024

vcf2maf generates an empty maf file

Status: Open.

#353 In mskcc/vcf2maf;

·Olsennnnn openedon Apr 13, 2024

Normalization of vcf file

Status: Open.

#352 In mskcc/vcf2maf;

·celine-weng openedon Apr 1, 2024

Empty 't_depth' 't_ref_count' 't_alt_count' from VCF with format GT:GL:GOF:GQ:NR:NV

Status: Open.

#351 In mskcc/vcf2maf;

·ChristianRohde openedon Feb 12, 2024