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1. RagoutRagoutPublic

   Chromosome-level scaffolding using multiple references

   Python 159 27

2. maf2syntenymaf2syntenyPublic

   A tool for recovering synteny blocks from multiple alignment

   C++ 29 7

3. KolmogorovLab/hapdupKolmogorovLab/hapdupPublic

   Pipeline to convert a haploid assembly into diploid

   Python 100 11

4. pbclippbclipPublic

   A simple tool to fix PacBio fasta/q that was not properly split into subreads

   C++ 14 1

5. KolmogorovLab/hapdiffKolmogorovLab/hapdiffPublic

   SV calling for diploid assemblies

   Python 26 3

6. FlyeFlyePublic

   De novo assembler for single molecule sequencing reads using repeat graphs

   C 815 167