makovalab-psu

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NoiseCancellingRepeatFinderNoiseCancellingRepeatFinderPublic
Noise-Cancelling Repeat Finder
Python 24 5
T2T_primate_XYT2T_primate_XYPublic
Python 13
DiscoverYDiscoverYPublic
K-mer based classifier for Y-contig identification from Whole Genome Assemblies
Jupyter Notebook 11 5
RecoverYRecoverYPublic
K-mer based read classification for Y-chromosome specific sequencing and assembly
Python 9 5
overlapsoverlapsPublic
Jupyter Notebook 5
Mito_nuclear_incompatibilityMito_nuclear_incompatibilityPublic
Repository containing data files and scripts for the mito-nuclear paper
q 4 2

Repositories

Showing 10 of 43 repositories

GreatApeT2T-G4s Public
Evolutionary Dynamics of G-Quadruplexes across Great Ape Telomere-to-Telomere Genomes
makovalab-psu/GreatApeT2T-G4s’s past year of commit activity
Jupyter Notebook0MIT 1 0 0 UpdatedMar 11, 2025
g4Discovery Public
Scripts for annotating/predicting G-Quadruplexes (G4s) in a genome sequence, combining pqsfinder and G4Hunter.
makovalab-psu/g4Discovery’s past year of commit activity
Python0MIT 1 0 0 UpdatedFeb 28, 2025
mapsea Public
Mapping And Prediction of Shared Elements in Alignments
makovalab-psu/mapsea’s past year of commit activity
Python0MIT0 0 0 UpdatedFeb 26, 2025
T2T_primate_nonB Public
makovalab-psu/T2T_primate_nonB’s past year of commit activity
Shell0 1 0 0 UpdatedFeb 26, 2025
AmpliCoNE-tool Public
AmpliCoNE: Ampliconic Copy Number Estimator
makovalab-psu/AmpliCoNE-tool’s past year of commit activity
Python 1 1 0 0 UpdatedDec 12, 2024
human_mtDNA_duplexSeq Public
makovalab-psu/human_mtDNA_duplexSeq’s past year of commit activity
0AGPL-3.00 0 0 UpdatedDec 5, 2024
T2T_primate_autosomes Public
Code from the Makova lab for the T2T primates autosome paper.
makovalab-psu/T2T_primate_autosomes’s past year of commit activity
Python00 0 0 UpdatedAug 5, 2024
T2T_primate_XY Public
makovalab-psu/T2T_primate_XY’s past year of commit activity
Python 13MIT0 1 0 UpdatedJun 7, 2024
mitonuclear_expression Public
This is a repository for the article "Exploring the effects of mitonuclear interactions on mitochondrial DNA gene expression in humans" (doi: 10.3389/fgene.2022.797129).
makovalab-psu/mitonuclear_expression’s past year of commit activity
Jupyter Notebook 10 0 0 UpdatedApr 11, 2024
YAG_analysis Public
Analysis scripts for "Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome in Great Apes"
makovalab-psu/YAG_analysis’s past year of commit activity
Raku0 1 0 0 UpdatedJul 31, 2023