lilab-bcb

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cumuluscumulusPublic
Cloud-based scalable and efficient single-cell genomics workflows
WDL 60 30
pegasuspegasusPublic
A tool for analyzing trascriptomes of millions of single cells.
Python 85 20
pegasusiopegasusioPublic
pegasus io module for reading/writing single-cell genomics data
Python 7 3
demuxEMdemuxEMPublic
Demultiplexing cell/nucleus hashing data for single-cell genomics
Python 2 2
harmony-pytorchharmony-pytorchPublic
Python 51 9
nmf-torchnmf-torchPublic
Python 10 2

Repositories

Showing 10 of 37 repositories

harmony-pytorch Public
lilab-bcb/harmony-pytorch’s past year of commit activity
Python 51BSD-3-Clause 9 0 0 UpdatedMar 18, 2025
cumulus Public
Cloud-based scalable and efficient single-cell genomics workflows
lilab-bcb/cumulus’s past year of commit activity
WDL 60BSD-3-Clause 30 8 0 UpdatedMar 18, 2025
stratocumulus Public
Backend component of Cumulus for different cloud environments.
lilab-bcb/stratocumulus’s past year of commit activity
Python 2BSD-3-Clause0 1 1 UpdatedMar 17, 2025
pegasus Public
A tool for analyzing trascriptomes of millions of single cells.
lilab-bcb/pegasus’s past year of commit activity
Python 85BSD-3-Clause 20 11 1 UpdatedMar 15, 2025
cumulus_feature_barcoding Public
lilab-bcb/cumulus_feature_barcoding’s past year of commit activity
C++ 2BSD-3-Clause 1 0 0 UpdatedMar 7, 2025
cirrocumulus Public
Bring your single-cell data to life
lilab-bcb/cirrocumulus’s past year of commit activity
JavaScript 79BSD-3-Clause 17 12 2 UpdatedMar 3, 2025
altocumulus Public
Command line tool for submitting WDL jobs to Terra or Cromwell server.
lilab-bcb/altocumulus’s past year of commit activity
Python 7BSD-3-Clause0 3 1 UpdatedMar 3, 2025
backedarray Public
Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5
lilab-bcb/backedarray’s past year of commit activity
Jupyter Notebook 6BSD-3-Clause0 0 1 UpdatedMar 3, 2025
cumulus-fb-test Public
Test data and scripts for cumulus_feature_barcoding
lilab-bcb/cumulus-fb-test’s past year of commit activity
Shell00 0 0 UpdatedFeb 6, 2025
pegasusio Public
pegasus io module for reading/writing single-cell genomics data
lilab-bcb/pegasusio’s past year of commit activity
Python 7BSD-3-Clause 3 1 1 UpdatedSep 19, 2024