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feat: add an option to output MD in the XA tag#439
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nh13 added a commit to fulcrumgenomics/pybwa that referenced this pull requestJan 17, 2025
This requires us to patch bwa, which we store in the patchessub-directory. They are applied before we build, and reverted afterthe build completes (regardless of success). They can be removedwhen the bwa PRs are merged and submodule updated.See:lh3/bwa#438See:lh3/bwa#439
nh13 added a commit to fulcrumgenomics/pybwa that referenced this pull requestJan 17, 2025
This requires us to patch bwa, which we store in the patchessub-directory. They are applied before we build, and reverted afterthe build completes (regardless of success). They can be removedwhen the bwa PRs are merged and submodule updated.See:lh3/bwa#438See:lh3/bwa#439
nh13 added a commit to fulcrumgenomics/pybwa that referenced this pull requestJan 17, 2025
This requires us to patch bwa, which we store in the patchessub-directory. They are applied before we build, and reverted afterthe build completes (regardless of success). They can be removedwhen the bwa PRs are merged and submodule updated.See:lh3/bwa#438See:lh3/bwa#439
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This is useful when we want to inspect all the hits.