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Pull requests: lh3/bwa
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set optimization from -O2 to -O3, 3.4 % performance increase observed
#278 openedApr 22, 2020 byandreasbuhrLoading…
Update bwape.c to allow equal reads in pair to be mapped as mapped in proper pair
#259 openedNov 25, 2019 byschultzdreLoading…
bwa mem 20% speedup with vector instructions (Fixed intel-extend branch)
#226 openedNov 24, 2018 byzamaudioLoading…
Add -C param for sampe/samse, to copy fastq comments into sam output
#203 openedMay 30, 2018 bygrahamgowerLoading…
Allow larger chunks of reads to be processed, and estimate the insert…
#106 openedJan 29, 2017 byrbhLoading…
Add documentation describing the output format of out.hla.* files (doc fix only)
#39 openedJan 5, 2015 byheuermhLoading…
Fix bam IO to take account of BAM_FPAIRED when checking BAM_FREAD1/2
#18 openedJun 13, 2013 bymp15Loading…
Adds check that ref sequence names do not contain semicolon during index
#16 openedMay 20, 2013 byvsbuffaloLoading…
Adding a flag to sampe (-d) to disable pair rescuing if too many rescue attempts are made.
#12 openedSep 30, 2012 bydrioLoading…
ProTip!no:milestone will show everything without a milestone.