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I am an assistant professor at Stockholm University (the Department of Mathematics) and SciLifeLab Fellow at the National Center for Molecular Biosciences, Science for Life Laboratory. My group develops algorithms and models for analyzing large biological datasets.
Aligns short reads using dynamic seed size with strobemers
C++ 165 18
A repository for generating strobemers and evalaution
C++ 77 12
Long-read splice alignment with high accuracy
Python 62 10
Error correction of ONT transcript reads
Python 59 9
De novo clustering of long transcript reads into genes
Python 58 8
BESST - scaffolder for genomic assemblies
Python 57 13