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Using SDSS imaging to predict galaxy metallicity. Maintained by@jwuphysics@boada
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We use convolutional neural networks (CNNs or convnets) to predictgalaxy properties using Sloan Digital Sky Survey (SDSS)gri images.Gas-phase metallicity, which is often estimated by using opticalspectroscopy, can also be estimated using our CNN.
We describe our methods in a paper: Wu & Boada (2019, MNRAS, 484, 4683;arXiv:1810.12913).
See also asimplified demo of our work.
Download this repository by running
git clone https://github.com/jwuphysics/galaxy-cnns.gitcd galaxy-cnns
All analysis was performed inside the Jupyter notebooks using a Python3 environment.We use version 0.7.0 of thefastai machinelearning framework built atopPytorch. This can be installedby following the instructions on the Fastai README page. We will soon have workingexamples for Fastai version 1.0, which can be installed by running:
git clone https://github.com/fastai/fastai.gitcd fastai conda env create -f environment.yml
Note that you will need a GPU. If you don't have one, substitute the previous last linewith this instead:
conda env create -f environment-cpu.yml
Before executing any code (or running any notebooks), enter the environmentby runningconda activate fastai
(orconda activate fastai-cpu
).
If you encounter any errors, please feel free to reach out to me (@jwuphysics)or checkthis poston the fastai forums.
We queried theSDSS DR14 image cutout serviceusing the script./download_images.py
in order to obtaingri images.
We queried theSDSS MPA-JHU DR7 catalogof spectral line and derived galaxy properties using the commands in theSQL
script,./SDSS_sql_query.sql
.
To run the our notebooks, make sure that you are in thefastai
conda environment first,and then runjupyter notebook
and enter the./notebook
directory.
If you wish to reproduce all figures from the paper, run the notebooks in the./notebook/paper
directory. You will first need to have downloaded all of thedata and executed the notebooks labeled"06. Predicting stellar mass in addition to metallicity.ipynb" and"10. The effects of resolution.ipynb" first (sorry about this disorganization -- thismay be cleaned up in a future update).
If you would like to reference our paper,please use the following citation, produced byNASA ADS:
@ARTICLE{2019MNRAS.484.4683W, author = {{Wu}, John F. and {Boada}, Steven}, title = "{Using convolutional neural networks to predict galaxy metallicity from three-colour images}", journal = {Monthly Notices of the Royal Astronomical Society}, year = "2019", month = "Apr", volume = {484}, number = {4}, pages = {4683-4694}, doi = {10.1093/mnras/stz333},archivePrefix = {arXiv}, eprint = {1810.12913}, primaryClass = {astro-ph.GA} }
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Using SDSS imaging to predict galaxy metallicity. Maintained by@jwuphysics@boada