PinnedLoading

1. exfiexfiPublic

   Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools

   Python 3 1

2. smsksmskPublic template

   Snakemake skeleton - Build workflows with Snakemake

   Python 19 6

3. smsk_khmer_trinitysmsk_khmer_trinityPublic

   Transcriptome assembly via digital normalization with khmer and Trinity

   Python 4 2

4. smsk_annotatesmsk_annotatePublic

   Pipeline to annotate a transcriptome assembly, coding and noncoding parts.

   R 1 1

5. smsk_selectionsmsk_selectionPublic

   Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml

   C++ 7 1

6. smsk_trinotatesmsk_trinotatePublic

   Snakemake workflow to run transdecoder + trinotate

   Python 8 2