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R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

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jefferis/gphys

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This R package provides relatively specialised routines for analysing electrophysiological data determined by the research inour lab using whole cell patch clamp techniques to analyse olfactory processing in the fly. Nevertheless it is possible that others, especially anyone using Jason Rothman'sNeuromatic data analysis and acquisition package for Igor Pro, may find some functionality useful. It can also be used to reproduce some of the analysis / figures in our published worke.g. in the packagefrulhns.

For further details see the RDESCRIPTION file.

Installation

Currently there isn't a released version onCRAN.You can usethedevtools package to install either the latestrelease ordevelopment version:

# install devtools if requiredinstall.packages("devtools")library(devtools)# latest release (recommended)install_github("jefferis/gphys")# develop branch may occasionally have changes that have not been merged to masterinstall_github("jefferis/gphys@develop")

Note: Windows users needRtools anddevtools to install this way.

Acknowledgements

This tool naturally depends on a number of other R packages including my own packageIgorR. However the most sophisticated and domain-specific dependency is theSTAR package of Christophe Pouzat – this offers a great deal of exciting functionality that we hope to use in future.

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R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

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