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Data Wrangling and Automated Reports from 'SIVIGILA' source

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R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

R 35 12

serofoi

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Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

R 20 4

vaccineff

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R package with tools for estimating vaccine effectiveness and vaccine related metrics

R 16 4

cfr

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R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

R 13 4

epiCo

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R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

R 12 2

Showing 10 of 61 repositories

tutorials-early Public
Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.
epiverse-trace/tutorials-early’s past year of commit activity
R 2 3 37 5 UpdatedMar 18, 2025
epiparameter Public
R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases
epiverse-trace/epiparameter’s past year of commit activity
R 35 12 52 (2 issues need help) 1 UpdatedMar 18, 2025
etdashboard Public
Developer dashboard for a universe overview of Epiverse-TRACE packages
epiverse-trace/etdashboard’s past year of commit activity
R 10 0 0 UpdatedMar 18, 2025
etstats Public
epiverse-trace/etstats’s past year of commit activity
R 1CC0-1.00 2 0 UpdatedMar 18, 2025
epitkit Public
epiverse-trace/epitkit’s past year of commit activity
R0 2 7 0 UpdatedMar 18, 2025
tutorials-middle Public
Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.
epiverse-trace/tutorials-middle’s past year of commit activity
R 3 2 63 (2 issues need help) 0 UpdatedMar 18, 2025
epimodelac Public
Training materials for the epimodelac workshop
epiverse-trace/epimodelac’s past year of commit activity
R 8 4 11 1 UpdatedMar 18, 2025
tutorials-late Public
Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.
epiverse-trace/tutorials-late’s past year of commit activity
R 2 1 36 0 UpdatedMar 18, 2025
research-compendium Public
epiverse-trace/research-compendium’s past year of commit activity
R 10 19 1 UpdatedMar 18, 2025
tutorials Public
epiverse-trace/tutorials’s past year of commit activity
R 3 4 38 (3 issues need help) 0 UpdatedMar 18, 2025