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@epifluidlab

epifluidlab

Popular repositoriesLoading

  1. FinaleToolkitFinaleToolkitPublic

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    Python 21 7

  2. FinaleMeFinaleMePublic

    Java 12 2

  3. cragrcragrPublic

    R package for CRAG

    R 11 4

  4. CRAGCRAGPublic

    De novo characterization of cell-free DNA fragmentation hotspots

    MATLAB 5 2

  5. finaledb_workflowfinaledb_workflowPublic

    Python 4 2

  6. finaledb_portalfinaledb_portalPublic

    JavaScript 3 1

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Showing 10 of 23 repositories
  • CRAGR_v2 Public

    CRAGR_v2 is a CRAGR pipeline that handles hotspots calling for multiple replicates using the irreproducible discovery rate (IDR).

    epifluidlab/CRAGR_v2’s past year of commit activity
    R 2MIT0 0 0 UpdatedMar 18, 2025
  • FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    epifluidlab/FinaleToolkit’s past year of commit activity
    Python 21MIT 7 0 0 UpdatedMar 12, 2025
  • FinaleMe Public
    epifluidlab/FinaleMe’s past year of commit activity
    Java 12MIT 2 3 0 UpdatedMar 5, 2025
  • bedtorch Public Forked fromhaizi-zh/bedtorch

    Fast and native toolsuite for BED file manipulation

    epifluidlab/bedtorch’s past year of commit activity
    HTML0 5 0 0 UpdatedFeb 27, 2025
  • cragr Public

    R package for CRAG

    epifluidlab/cragr’s past year of commit activity
    R 11 4 0 1 UpdatedFeb 17, 2025
  • finaletoolkit_workflow Public

    Extract Finaletoolkit features from several files

    epifluidlab/finaletoolkit_workflow’s past year of commit activity
    Python 1MIT0 0 0 UpdatedFeb 16, 2025
  • MethylSeqDesign Public Forked fromliupeng2117/MethylSeqDesign

    MethylSeqDesign is a framework for power calculation and study design of Methy-Seq experiments by utilizing information from pilot data.

    epifluidlab/MethylSeqDesign’s past year of commit activity
    R0 1 0 0 UpdatedFeb 11, 2025
  • POWEREDBiSeq Public Forked fromdorotheavellame/POWEREDBiSeq

    Scripts for POWEREDBiSeq, a tool which estimates power in bisulfite sequencing studies

    epifluidlab/POWEREDBiSeq’s past year of commit activity
    R0 1 0 0 UpdatedFeb 10, 2025
  • epifluidlab/finaletoolkit-docs’s past year of commit activity
    HTML00 0 0 UpdatedOct 10, 2024
  • epifluidlab/epifluidlab.github.io’s past year of commit activity
    HTML 2BSD-3-Clause0 0 3 UpdatedSep 5, 2024

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