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Commit5ca8d8d

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Customize Jupyter & IPython config (empa-scientific-it#316)
- Move Jupyter configs to system-wide locations (`/opt/conda`).- Add settings to show hidden files in JupyterLab.- Remove `ipython_config.py` from `.gitignore`.- Add auto-import statement for IPython.
1 parentbf5a5b0 commit5ca8d8d

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‎.gitignore‎

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@@ -79,7 +79,6 @@ target/
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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.python-version

‎Dockerfile‎

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@@ -26,11 +26,11 @@ RUN mamba env update -n base -f /tmp/environment.yml && \
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pip uninstall -y torch torchvision && \
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# Install PyTorch packages without cache - conditionally based on variant
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if ["$PYTORCH_VARIANT" ="cpu" ]; then \
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echo"Installing CPU-only PyTorch" && \
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pip install --no-cache-dir --force-reinstall torch torchvision --index-url https://download.pytorch.org/whl/cpu; \
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echo"Installing CPU-only PyTorch" && \
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pip install --no-cache-dir --force-reinstall torch torchvision --index-url https://download.pytorch.org/whl/cpu; \
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else \
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echo"Installing CUDA-enabled PyTorch" && \
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pip install --no-cache-dir --force-reinstall torch torchvision; \
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echo"Installing CUDA-enabled PyTorch" && \
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pip install --no-cache-dir --force-reinstall torch torchvision; \
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fi && \
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# Clean up all package caches to reduce image size
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mamba clean --all -f -y && \
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apt-get clean && \
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rm -rf /var/lib/apt/lists/*
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# System-wide Jupyter Server config
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COPY docker/jupyter_server_config.py /opt/conda/etc/jupyter/
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# Jupyter Lab settings
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RUN mkdir -p /opt/conda/share/jupyter/lab/settings
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COPY docker/overrides.json /opt/conda/share/jupyter/lab/settings/
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# System-wide IPython profile config
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RUN mkdir -p /opt/conda/etc/ipython
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COPY docker/ipython_config.py /opt/conda/etc/ipython/
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# Switch back to the default notebook user
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USER ${NB_UID}
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@@ -72,9 +83,6 @@ COPY --from=builder ${CONDA_DIR} ${CONDA_DIR}
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# Copy home directory with configurations
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COPY --from=builder --chown=${NB_UID}:${NB_GID} /home/${NB_USER} /home/${NB_USER}
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# Prepare IPython configuration
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COPY --chown=${NB_UID}:${NB_GID} binder/ipython_config.py ${HOME}/.ipython/profile_default/
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# Set the working directory to user's home (repository will be cloned here by Renku)
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WORKDIR /home/${NB_USER}
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‎binder/ipython_config.py‎

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## lines of code to run at IPython startup.
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# Default: []
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# c.InteractiveShellApp.exec_lines = []
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c.InteractiveShellApp.exec_lines= [
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"from typing import Any, Callable, Dict, List, Optional, Tuple, Union"
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]
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## A list of dotted module names of IPython extensions to load.
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# Default: []

‎docker/ipython_config.py‎

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# Configuration file for ipython.
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c=get_config()# noqa # type: ignore
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# Automatically load testsuite extension
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c.InteractiveShellApp.extensions= ["tutorial.tests.testsuite"]
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# Automatically import some modules
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c.InteractiveShellApp.exec_lines= [
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"from typing import Any, Callable, Dict, List, Optional, Tuple, Union"
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]

‎docker/jupyter_server_config.py‎

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# Configuration file for jupyter server.
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c=get_config()# noqa # type: ignore
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# Allow serving files/folders beginning with a dot
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c.ContentsManager.allow_hidden=True

‎docker/overrides.json‎

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{
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"@jupyterlab/filebrowser-extension:browser": {
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"showHiddenFiles":true
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}
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}

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