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Javascript library to convert EDAM to JSON/JSON-LD

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edamontology/edam2json-js

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Javascript library to convert EDAM to different formats JSON/TSV/CSV.Used both as a cli and a browser-compatible package.

Installation

$ yarn add edam2json-js

or

$ npm install edam2json-js

Importing/Requiring

import{jsonTreeFromURL}from"edam2json-js";

or

constjsonTreeFromURL=require("edam2json-js").jsonTreeFromURL;

Usage


As a browser package

jsonTreeFromURL is a function that takes a url (with .owl extention) as a first argument and outputs the converted json tree to theonSuccess function passed as a second argument. The third argument isonError function to be excuted in case of error (e.g CORS errors)

consturl="https://raw.githubusercontent.com/edamontology/edamontology/main/EDAM_dev.owl";jsonTreeFromURL(url,(tree)=>{console.log(tree);},(err)=>{console.log(err);});

As a cli

For converting OWL file to json tree of terms.

edam2json-js -jt EDAM_FILE_PATH [-o OUTPUT_FILE]

For converting OWL file to csv/tsv format.

edam2json-js -csv EDAM_FILE_PATH [-o OUTPUT_FILE]
edam2json-js -tsv EDAM_FILE_PATH [-o OUTPUT_FILE]

License

MIT license

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Javascript library to convert EDAM to JSON/JSON-LD

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