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EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data lif…

Shell 131 58

edam-bioimaging

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An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and other sciences.

Shell 11 8

edam-browser

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Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

JavaScript 15 25

edam-popovers

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A Firefox & Chrome extension that displays detailed information about EDAM concepts

JavaScript 4 3

edamontologyDocs

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Documentation for EDAM.

Makefile 1 3

edammap

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A tool for mapping various text input to EDAM ontology concepts

Java 9 5

Showing 10 of 28 repositories

edammcp Public
edamontology/edammcp’s past year of commit activity
Python 7MIT 11 20 5 UpdatedNov 5, 2025
edamontology Public
EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targeting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.
edamontology/edamontology’s past year of commit activity
Shell 131CC-BY-SA-4.0 58 188 (12 issues need help) 30 UpdatedNov 5, 2025
edam-ontology.py Public
edamontology/edam-ontology.py’s past year of commit activity
Python 3 1 0 0 UpdatedOct 30, 2025
edam-bioimaging Public
An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and other sciences.
edamontology/edam-bioimaging’s past year of commit activity
Shell 11CC-BY-SA-4.0 8 19 (3 issues need help) 2 UpdatedOct 26, 2025
caseologue Public
Validation tools for the EDAM ontology
edamontology/caseologue’s past year of commit activity
CSS 2MIT 3 7 (2 issues need help) 2 UpdatedSep 12, 2025
edam2json-js Public
Javascript library to convert EDAM to JSON/JSON-LD
edamontology/edam2json-js’s past year of commit activity
JavaScript 3MIT 2 1 1 UpdatedJun 18, 2025
edam-browser Public
Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies
edamontology/edam-browser’s past year of commit activity
JavaScript 15MIT 25 29 (3 issues need help) 4 UpdatedMay 9, 2025
.github Public
Repo for organisation-level README
edamontology/.github’s past year of commit activity
00 0 0 UpdatedMar 19, 2025
scripts Public
A repo for various kinds of scripts that do something around EDAM
edamontology/scripts’s past year of commit activity
Python00 0 0 UpdatedFeb 18, 2025
edam-sandbox Public
Miscellaneous files for test purposes
edamontology/edam-sandbox’s past year of commit activity
Jupyter Notebook 1 2 37 (1 issue needs help) 6 UpdatedDec 5, 2024