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@draeger-lab

Dräger Lab

Computational Systems Biology Lab within the Institute for Bioinformatics and Medical Informatics (IBMI) of the University of Tübingen

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  1. EscherConverterEscherConverterPublic

    A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

    Java 15 10

  2. ModelPolisherModelPolisherPublic

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    Java 23 7

  3. SBMLmeSBMLmePublic

    Encoding ME models in SBML

    Java 7 2

  4. refinegemsrefinegemsPublic

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Jupyter Notebook 11 1

Repositories

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Showing 10 of 38 repositories
  • SBSCL Public

    The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

    draeger-lab/SBSCL’s past year of commit activity
    HTML 22LGPL-3.0 12 15(3 issues need help) 0 UpdatedMar 25, 2025
  • refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    draeger-lab/refinegems’s past year of commit activity
    Jupyter Notebook 11MIT 1 22(4 issues need help) 1 UpdatedMar 25, 2025
  • SPECIMEN Public

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

    draeger-lab/SPECIMEN’s past year of commit activity
    Jupyter Notebook 5GPL-3.0 1 16(5 issues need help) 0 UpdatedMar 21, 2025
  • SBOannotator Public

    SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

    draeger-lab/SBOannotator’s past year of commit activity
    Python 8GPL-3.0 2 1 0 UpdatedFeb 28, 2025
  • ModelPolisher Public

    ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

    draeger-lab/ModelPolisher’s past year of commit activity
    Java 23 7 14 0 UpdatedJan 28, 2025
  • TFpredict Public

    Identification and structural characterization of transcription factors based on supervised machine learning

    draeger-lab/TFpredict’s past year of commit activity
    Java 7GPL-3.0 3 1(1 issue needs help) 0 UpdatedJan 24, 2025
  • BOFdat Public Forked fromjclachance/BOFdat

    Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

    draeger-lab/BOFdat’s past year of commit activity
    Jupyter Notebook0 6 0 0 UpdatedDec 3, 2024
  • MPClient Public

    Client library for the MPServer

    draeger-lab/MPClient’s past year of commit activity
    Python 20 0 0 UpdatedNov 29, 2024
  • MPServer Public

    Server Implementation for the Model Polisher

    draeger-lab/MPServer’s past year of commit activity
    Clojure00 0 0 UpdatedNov 29, 2024
  • MassChargeCuration Public

    Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.

    draeger-lab/MassChargeCuration’s past year of commit activity
    Jupyter Notebook 4 1 0 0 UpdatedOct 10, 2024

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