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1. computational-cell-analytics/micro-samcomputational-cell-analytics/micro-samPublic

   Segment Anything for Microscopy

   Jupyter Notebook 493 60

2. torch-emtorch-emPublic

   Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

   Jupyter Notebook 89 22

3. elfelfPublic

   Utils and convenience functions for large-scale bio-image analysis.

   Python 54 18

4. z5z5Public

   Lightweight C++ and Python interface for datasets in zarr and N5 format

   C++ 119 28

5. cluster_toolscluster_toolsPublic

   Distributed segmentation for bio-image-analysis

   Python 37 14

6. DerThorsten/niftyDerThorsten/niftyPublic

   A nifty library for graph based image segmentation.

   C++ 44 21