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CZ ID is a hypothesis-free global software platform that helps scientists identify pathogens in metagenomic sequencing data.

• Discover - Identify the pathogen landscape
• Detect - Monitor and review potential outbreaks
• Decipher - Find potential infecting organisms in large datasets

A collaborative open project ofChan Zuckerberg Initiative andChan Zuckerberg Biohub.

Check out our repositories:

• czid-web - Frontend portal (here)
• czid-workflows - Bioinformatics workflows
• czid-cli - Command line upload interface
• czid-bench - Pipeline benchmarking tools

Check out ourwiki for getting started with development in this repository and in CZ ID in general.