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Bayesian Inferential Regression for Differential Microbiome Analysis

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biocore/BIRDMAn

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GitHub Actions CIDocumentation StatusPyPIDOI

BayesianInferentialRegression forDifferentialMicrobiomeAnalysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.

See thedocumentation for details on usage.

For an example of running BIRDMAn - see thisGoogle Colab notebook.

Installation

Currently BIRDMAn requires Python 3.8 or higher.

We recommend usingmamba for installation of dependencies.

mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpypip install birdman

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