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Bayesian Inferential Regression for Differential Microbiome Analysis
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BayesianInferentialRegression forDifferentialMicrobiomeAnalysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.
See thedocumentation for details on usage.
For an example of running BIRDMAn - see thisGoogle Colab notebook.
Currently BIRDMAn requires Python 3.8 or higher.
We recommend usingmamba for installation of dependencies.
mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpypip install birdman
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Bayesian Inferential Regression for Differential Microbiome Analysis