BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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RNA-BloomRNA-BloomPublic
🌺 reference-free transcriptome assembly for short and long reads
Java 103 7
LongStitchLongStitchPublic
Correct and scaffold assemblies using long reads
Makefile 50 7
ntRootntRootPublic
🌳 Human ancestry inference from genomic data
Python 6
btllibbtllibPublic
Bioinformatics Technology Lab common code library
C++ 25 6
ntEditntEditPublic
✏️ Genome assembly polishing & SNV detection
C++ 67 9
goldrushgoldrushPublic
Linear-time de novo Long Read Assembler
C++ 39 2

Repositories

Showing 10 of 118 repositories

btl Public
🔬 Bioinformatics Technology Lab, Genome Sciences Centre
bcgsc/btl’s past year of commit activity
HTML 1 3 4 0 UpdatedMar 27, 2025
ntRoot Public
🌳 Human ancestry inference from genomic data
bcgsc/ntRoot’s past year of commit activity
Python 6GPL-3.00 0 0 UpdatedMar 27, 2025
pori_ipr_api Public
Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform
bcgsc/pori_ipr_api’s past year of commit activity
JavaScript 80 0 8 UpdatedMar 27, 2025
ntEmbd Public
Deep learning embedding for nucleotide sequences
bcgsc/ntEmbd’s past year of commit activity
Python 17 3 1 0 UpdatedMar 26, 2025
pori_ipr_client Public
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
bcgsc/pori_ipr_client’s past year of commit activity
TypeScript 8GPL-3.0 1 0 7 UpdatedMar 26, 2025
pori_python Public
bcgsc/pori_python’s past year of commit activity
Python0GPL-3.0 2 1 4 UpdatedMar 25, 2025
goldpolish Public
GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler
bcgsc/goldpolish’s past year of commit activity
C++ 6GPL-3.00 1 0 UpdatedMar 24, 2025
AMPlify Public
Attentive deep learning model for antimicrobial peptide prediction
bcgsc/AMPlify’s past year of commit activity
Python 43 11 3 (1 issue needs help) 0 UpdatedMar 22, 2025
pori_graphkb_api Public
REST API for the GraphKB project
bcgsc/pori_graphkb_api’s past year of commit activity
JavaScript 4GPL-3.0 1 6 0 UpdatedMar 19, 2025
triAMPh Public
TaRget Identification of AntiMicrobial Peptides with Heterogenious graph attention networks
bcgsc/triAMPh’s past year of commit activity
Python0MIT0 0 0 UpdatedMar 19, 2025