The Ucar Lab

Develops computational models using genome datasets to study gene regulation and identify hypotheses for genomic medicine.

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The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
https://www.jax.org/research-and-faculty/research-labs/the-ucar-lab

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AMULETAMULETPublic
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
Python 31 6
iasvaiasvaPublic
Iteratively Adjusted Surrogate Variable Analysis
R 8 1
PEASPEASPublic
Code repository for PEAS (Predict Enhancers from ATAC-seq), including feature extraction files and easy to use python script for training enhancer models and predicting enhancers using MLP Neural N…
Java 9 2
BiFETBiFETPublic
A robust statistical test for TF footprint data analyses
R 2 2
Human-immune-aging-ServerHuman-immune-aging-ServerPublic
human-immune-aging-server [shiny application]
R 3
CoRE-ATACCoRE-ATACPublic
Java 9 1

Repositories

Showing 10 of 33 repositories

ucarlab.github.io Public Forked fromgreenelab/lab-website-template
The Ucar Lab website
UcarLab/ucarlab.github.io’s past year of commit activity
HTML 2 341 0 0 UpdatedFeb 12, 2025
latent_cmv_older_adults Public
UcarLab/latent_cmv_older_adults’s past year of commit activity
HTML00 0 0 UpdatedFeb 12, 2025
Mammary_gland_aging Public
Mammary gland aging project
UcarLab/Mammary_gland_aging’s past year of commit activity
HTML 6 3 0 0 UpdatedNov 25, 2024
ERS-vs-CYT-Islet-Stress-Responses Public
This repository contains scripts used to generate figures in paper titled 'Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Type 2 Diabetes Genetic Insights'
UcarLab/ERS-vs-CYT-Islet-Stress-Responses’s past year of commit activity
00 1 0 UpdatedSep 7, 2024
COVID-RSV-Infants Public
Code repository for the COVID/RSV Infant Project.
UcarLab/COVID-RSV-Infants’s past year of commit activity
Jupyter Notebook00 0 0 UpdatedAug 16, 2024
AMULET Public
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
UcarLab/AMULET’s past year of commit activity
Python 31GPL-3.0 6 12 1 UpdatedJan 3, 2023
Scripts-Tutorials Public
Repository for lab scripts and tutorials.
UcarLab/Scripts-Tutorials’s past year of commit activity
Python00 0 0 UpdatedNov 21, 2022
mice-aging-project Public
Code for Karakaslar, Katiyar et al., Aging Cell 2023
UcarLab/mice-aging-project’s past year of commit activity
HTML0 1 0 0 UpdatedAug 21, 2022
Covid_19_Scripts Public
UcarLab/Covid_19_Scripts’s past year of commit activity
C00 0 0 UpdatedAug 16, 2022
CoRE-ATAC Public
UcarLab/CoRE-ATAC’s past year of commit activity
Java 9MIT 1 4 0 UpdatedMar 15, 2022