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@PreibischLab

PreibischLab

Preibisch Lab

Popular repositoriesLoading

  1. BigStitcherBigStitcherPublic

    ImgLib2/BDV implementation of Stitching for large datasets

    Java 72 16

  2. RS-FISHRS-FISHPublic

    Tool for precise, interactive, fast and scalable FISH spot detection

    Java 48 14

  3. STIMSTIMPublic

    Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

    Java 26 1

  4. multiview-reconstructionmultiview-reconstructionPublic

    Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    Java 24 22

  5. multiview-simulationmultiview-simulationPublic

    Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

    Java 12 5

  6. dl-cell-countingdl-cell-countingPublic

    Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

    Jupyter Notebook 11 4

Repositories

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Showing 10 of 51 repositories
  • multiview-reconstruction Public

    Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    PreibischLab/multiview-reconstruction’s past year of commit activity
    Java 24GPL-2.0 22 23 3 UpdatedMar 15, 2025
  • STIM Public

    Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

    PreibischLab/STIM’s past year of commit activity
    Java 26GPL-3.0 1 0 0 UpdatedFeb 22, 2025
  • BigStitcher Public

    ImgLib2/BDV implementation of Stitching for large datasets

    PreibischLab/BigStitcher’s past year of commit activity
    Java 72GPL-2.0 16 84 1 UpdatedFeb 19, 2025
  • RS-FISH-Spark Public

    Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud

    PreibischLab/RS-FISH-Spark’s past year of commit activity
    Java 7GPL-2.00 1 1 UpdatedFeb 4, 2025
  • RS-FISH Public

    Tool for precise, interactive, fast and scalable FISH spot detection

    PreibischLab/RS-FISH’s past year of commit activity
    Java 48GPL-2.0 14 10 0 UpdatedFeb 4, 2025
  • FunctionFit Public

    Extension of Saalfelds mpi-cbg package for function fits

    PreibischLab/FunctionFit’s past year of commit activity
    Java 2BSD-3-Clause 1 0 0 UpdatedFeb 4, 2025
  • PreibischLab/Drosophila_Single_Cell_Brain_Circadian’s past year of commit activity
    Java00 0 3 UpdatedOct 3, 2024
  • FRC-QE Public

    Fourier Ring Correlation-based estimation of clearing quality

    PreibischLab/FRC-QE’s past year of commit activity
    HTML 3 2 0 0 UpdatedJul 13, 2023
  • PINNA-2D Public

    PINNA 2D - Pixel-wIse NeuroN Annotation

    PreibischLab/PINNA-2D’s past year of commit activity
    Kotlin00 0 1 UpdatedMay 23, 2023
  • bigdataviewer-core-movie Public Forked frombigdataviewer/bigdataviewer-core

    ImgLib2-based viewer for registered SPIM stacks and more

    PreibischLab/bigdataviewer-core-movie’s past year of commit activity
    Java 3BSD-2-Clause 37 0 0 UpdatedNov 28, 2022

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