Description of the bug

I am trying to adjust the memory but does not work. I would like to run it with less memory.

executor > local (5)
[8f/557d7f] process > PGSCATALOG_PGSCCALC:PGSCCALC:DOWNLOAD_SCOREFILES ([pgs_id:PGS000333, pgp_id:, trait_efo:]) [100%] 1 of 1 ✔
[9c/21bfad] process > PGSCATALOG_PGSCCALC:PGSCCALC:INPUT_CHECK:COMBINE_SCOREFILES (1) [100%] 1 of 1 ✔
[- ] process > PGSCATALOG_PGSCCALC:PGSCCALC:MAKE_COMPATIBLE:PLINK2_RELABELBIM -
[- ] process > PGSCATALOG_PGSCCALC:PGSCCALC:MAKE_COMPATIBLE:PLINK2_RELABELPVAR -
[skipped ] process > PGSCATALOG_PGSCCALC:PGSCCALC:MAKE_COMPATIBLE:PLINK2_VCF (Cineca chromosome 22) [100%] 1 of 1, stored: 1 ✔
[84/910dfb] process > PGSCATALOG_PGSCCALC:PGSCCALC:MATCH:MATCH_VARIANTS (Cineca chromosome 22) [100%] 1 of 1 ✔
[d6/a8fa69] process > PGSCATALOG_PGSCCALC:PGSCCALC:MATCH:MATCH_COMBINE (Cineca) [100%] 1 of 1 ✔
[8b/50c01f] process > PGSCATALOG_PGSCCALC:PGSCCALC:APPLY_SCORE:PLINK2_SCORE (Cineca chromosome 22 effect type additive 0) [100%] 1 of 1 ✔
[bd/428c76] process > PGSCATALOG_PGSCCALC:PGSCCALC:APPLY_SCORE:SCORE_AGGREGATE (Cineca) [ 0%] 0 of 1
[- ] process > PGSCATALOG_PGSCCALC:PGSCCALC:REPORT:SCORE_REPORT -
[- ] process > PGSCATALOG_PGSCCALC:PGSCCALC:DUMPSOFTWAREVERSIONS -

Execution cancelled -- Finishing pending tasks before exit
🛑 Default resources exceed availability 🛑
💡 See here on how to configure pipeline:https://nf-co.re/docs/usage/configuration#tuning-workflow-resources 💡
-[pgscatalog/pgsc_calc] Pipeline completed with errors-
ERROR ~ Error executing process > 'PGSCATALOG_PGSCCALC:PGSCCALC:APPLY_SCORE:SCORE_AGGREGATE (Cineca)'

Caused by:
Process requirement exceeds available memory -- req: 24 GB; avail: 16 GB

Command executed:

variants are always verified, so that variants in the scoring files

overlap perfectly with the scored variants

pgscatalog-aggregate -s Cineca_22_additive_0.sscore.zst -o . -v --no-split --verify_variants

cat <<-END_VERSIONS > versions.yml
SCORE_AGGREGATE:
pgscatalog.calc:$(echo $(python -c 'import pgscatalog.calc; print(pgscatalog.calc.version)'))
END_VERSIONS

Command exit status:

Command output:
(empty)

Work dir:
/Users/traycho/projects/genome/work/bd/428c7629bb418108514fd9e85346bc

Container:
ghcr.io/pgscatalog/pygscatalog:pgscatalog-utils-1.4.4

Tip: when you have fixed the problem you can continue the execution adding the option-resume to the run command line

-- Check '.nextflow.log' file for details

Command used and terminal output

nextflow run pgsc_calc/main.nf   --input samplesheet.csv   --target_build GRCh38   --pgs_id PGS000333   -profile docker   --outdir results  --min_overlap 0 --resume --memory '10 GB'

Relevant files

No response

System information

MacOS