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pgsc_calc

Public

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

Nextflow 152 33

pygscatalog

Public

Python applications and libraries for working with PGS data and the PGS Catalog

Python 12 6

PGS_Catalog

Public

An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

Python 10 5

pgs-harmonizer

Public

A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

Python 5 2

Showing 10 of 11 repositories

PGS_Catalog Public
An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.
PGScatalog/PGS_Catalog’s past year of commit activity
Python 10Apache-2.0 5 31 8 UpdatedNov 6, 2025
pygscatalog Public
Python applications and libraries for working with PGS data and the PGS Catalog
PGScatalog/pygscatalog’s past year of commit activity
Python 12Apache-2.0 6 6 2 UpdatedNov 5, 2025
pgs_template_validator Public
Standalone Python validator for the PGS Catalog Curation Template (Metadata)
PGScatalog/pgs_template_validator’s past year of commit activity
Python0Apache-2.0 2 0 1 UpdatedSep 1, 2025
pgsc_calc Public
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
PGScatalog/pgsc_calc’s past year of commit activity
Nextflow 152Apache-2.0 33 28 0 UpdatedAug 7, 2025
pgs-harmonizer Public
A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.
PGScatalog/pgs-harmonizer’s past year of commit activity
Python 5Apache-2.0 2 5 (1 issue needs help) 2 UpdatedJun 10, 2025
ebi-2024-pgsc_calc-webinar Public Forked fromEBISPOT/eshg-2024-workshop
Workshop material for the EBI Training webinar about pgsc_calc.
PGScatalog/ebi-2024-pgsc_calc-webinar’s past year of commit activity
HTML0CC-BY-4.0 1 0 0 UpdatedDec 2, 2024
fraposa_pgsc Public Forked fromdaviddaiweizhang/fraposa
Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)
PGScatalog/fraposa_pgsc’s past year of commit activity
Python 5 3 5 0 UpdatedAug 8, 2024
pgscatalog_utils Public archive
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
PGScatalog/pgscatalog_utils’s past year of commit activity
Python 5Apache-2.0 3 8 0 UpdatedJun 25, 2024
pgs_metadata_exports Public
Package to export PGS Catalog metadata
PGScatalog/pgs_metadata_exports’s past year of commit activity
Python0Apache-2.0 1 0 0 UpdatedNov 16, 2023
pgs_variants_coords Public
Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs
PGScatalog/pgs_variants_coords’s past year of commit activity
Python0Apache-2.0 2 0 1 UpdatedNov 1, 2023