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NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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MrBayes

Public

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

C 248 83

EMBLmyGFF3

Public

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

Python 62 17

development-guidelines

Public

Development guidlines for software within NBIS.

19 9

excelerate-scRNAseq

Public

Single RNA-seq data analysis with R (Finland, May, 2019)

HTML 226 107

GAAS

Public

Genome Assembly and Annotation Service code

Perl 213 48

IgDiscover-legacy

Public archive

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

Python 18 11

Showing 10 of 332 repositories

urdr Public
Timelogging system of NBIS
NBISweden/urdr’s past year of commit activity
TypeScript0AGPL-3.0 1 55 6 UpdatedJul 12, 2025
SCoRe_user_doc Public
SCoRe user documentation
NBISweden/SCoRe_user_doc’s past year of commit activity
Shell0GPL-3.00 1 0 UpdatedJul 12, 2025
Earth-Biogenome-Project-pilot Public
An assembly workflow for analysing data in the Earth Biogenome Project pilot project.
NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
Nextflow 14GPL-3.0 10 70 4 UpdatedJul 11, 2025
bp-landing-pages Public
Bigpicture project dataset landing page generator
NBISweden/bp-landing-pages’s past year of commit activity
Go00 0 7 UpdatedJul 10, 2025
workshop-epigenomics-RTDs Public
workshop website on readthedocs
NBISweden/workshop-epigenomics-RTDs’s past year of commit activity
19 15 0 1 UpdatedJul 10, 2025
data-submission-documentation Public
Documentation for data submissions from life science research in public repositories
NBISweden/data-submission-documentation’s past year of commit activity
Python 30 0 0 UpdatedJul 10, 2025
AGAT Public
Another Gtf/Gff Analysis Toolkithttps://nbisweden.github.io/AGAT/
NBISweden/AGAT’s past year of commit activity
Perl 513GPL-3.0 60 17 (1 issue needs help) 1 UpdatedJul 9, 2025
assembly-project-template Public template
This is a template for all assembly projects. Please read the instructions below on how to use it.
NBISweden/assembly-project-template’s past year of commit activity
Shell 3MIT 2 6 1 UpdatedJul 4, 2025
ega-public-metadata Public
Python code for interacting with the EGA public metadata API
NBISweden/ega-public-metadata’s past year of commit activity
Jupyter Notebook0MIT0 0 0 UpdatedJul 4, 2025
raukr-2026 Public
Raukr 2026 • NBIS Summer School • R Beyond the Basics
NBISweden/raukr-2026’s past year of commit activity
SCSS00 0 0 UpdatedJul 2, 2025