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@MouseLand

MouseLand

collaborative analysis of neural recordings

Popular repositoriesLoading

  1. cellposecellposePublic

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.5k 437

  2. KilosortKilosortPublic

    Fast spike sorting with drift correction

    Python 510 261

  3. suite2psuite2pPublic

    cell detection in calcium imaging recordings

    Jupyter Notebook 373 248

  4. rastermaprastermapPublic

    a visualization method for neural data

    Python 211 49

  5. facemapfacemapPublic

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 164 63

  6. stringer-pachitariu-et-al-2018bstringer-pachitariu-et-al-2018bPublic

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

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Showing 10 of 21 repositories
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 510GPL-3.0 261 29 1 UpdatedMar 18, 2025
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,538BSD-3-Clause 437 40(2 issues need help) 14 UpdatedMar 17, 2025
  • critical_init Public

    code for Pachitariu et al 2025

    MouseLand/critical_init’s past year of commit activity
    Jupyter Notebook0GPL-3.00 0 0 UpdatedFeb 28, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS00 0 0 UpdatedFeb 27, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 373GPL-3.0 248 109(1 issue needs help) 12 UpdatedJan 2, 2025
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 164GPL-3.0 63 11 1 UpdatedDec 5, 2024
  • cellpose-napari Public

    napari plugin for cellpose (seewww.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 52BSD-3-Clause 24 10 2 UpdatedOct 27, 2024
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 211GPL-3.0 49 8 0 UpdatedOct 19, 2024
  • MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3GPL-3.0 1 0 0 UpdatedAug 27, 2024
  • stringer-pachitariu-et-al-2018a Public

    Recordings of 10k neurons during spontaneous behaviors

    MouseLand/stringer-pachitariu-et-al-2018a’s past year of commit activity
    MATLAB 50 15 2 2 UpdatedMar 22, 2024
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