- Notifications
You must be signed in to change notification settings - Fork8
Clinical trial simulation for time-to-event endpoints
License
Merck/simtrial
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
simtrial is a fast and extensible clinical trial simulation frameworkfor time-to-event endpoints.
The easiest way to get simtrial is to install from CRAN:
install.packages("simtrial")
Alternatively, to use a new feature or get a bug fix,you can install the development version of simtrial from GitHub:
# install.packages("remotes")remotes::install_github("Merck/simtrial")
simtrial is intended to be a general purpose tool for simulating fixed, group sequential or adaptive clinical trials.It allows stratified populations and flexible parameters for generating enrollment, event times, dropout times.It takes care of bookkeeping to enable easily going from data generation to creating analysis datasets for evaluation of standard or innovative designs and testing procedures.For a single endpoint, it will easily generate trials with multiple arms (e.g., a single or multiple experimental arms versus a common control) and multiple study populations (e.g., overall population and biomarker positive).While tools are built into the package for logrank and weighted logrank tests, arbitrary testing and estimation procedures are easily applied.In addition to weighted logrank tests, we support combinations of weighted logrank tests (e.g., the MaxCombo test).The package used piecewise constant enrollment, failure and dropout rates as a simple modelable to approximate arbitrary distributions easily.This model also enables simulating non-proportional hazards assumptions that are transparent for users to explain to non-statistical collaborators.
simtrial is designed with a core philosophy of basing most computations onefficient table transformations and to have a package that is easy to qualifyfor use in regulated environments.It utilizes the blazingly fast data.table for tabular data processing,enhanced by C++ implementations to ensure optimal performance.However, it does not require the user to be a data.table or C++ user.
Initial areas of focus are:
- Generating time-to-event data for stratified trials using piecewise constantenrollment and piecewise exponential failure rates.Both proportional and non-proportional hazards are supported.Under proportional hazards, the assumptions are along the lines of thoseused by Lachin and Foulkes as implemented ingsDesign for derivinggroup sequential designs.
- Setting up data cutoffs for (interim and final) analyses.
- Support for weighted logrank tests with arbitrary weighting schemes,specifically supporting the Fleming-Harrington set of tests,including the logrank test.
Expectations for future development include:
- Provide a test suite to document that the package is fit for use in aregulatory environment.
- Further examples.
About
Clinical trial simulation for time-to-event endpoints