Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

MT-DREAM(ZS) algorithm for model optimization, calibration, selection

Particle Swarm Optimization algorithm in Python

Read PySB models and generate a script for PyDREAM calibration

Python framework for Systems Biology modeling [Lopez Lab Mods]

This repository provides source MATLAB codes for the structural analysis of Small Cell Lung Cancer Transcription Factor network using Dense Spanning Trees (DST) and Minimum Dense Spanning Trees (MDST)

Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML