High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute

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Badalona, Barcelona, Catalonia, Spain
http://www.germanstrias.org/technology-services/genomica-bioinformatica/
genbioinfo@igtp.cat

Popular repositoriesLoading

XICRAXICRAPublic
Small RNAseq pipeline for paired-end reads
Python 7 3
spaTyperspaTyperPublic
Forked frommjsull/spa_typing
Computational method for finding spa types.
Python 7 2
BacterialTyperBacterialTyperPublic
Bacterial identification pipeline
Python 3
HCGB.IGTP.DAnalysisHCGB.IGTP.DAnalysisPublic
Differential expression/methylation analysis for several platform and techniques
R 2
islandpathislandpathPublic
Forked frombrinkmanlab/islandpath
IslandPath standalone software
Perl 1
pyanpyanPublic
Forked fromttylec/pyan
pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which fun…
Python 1

Repositories

Showing 10 of 13 repositories

HCGB.IGTP.DAnalysis Public
Differential expression/methylation analysis for several platform and techniques
HCGB-IGTP/HCGB.IGTP.DAnalysis’s past year of commit activity
R 2GPL-3.00 0 0 UpdatedDec 13, 2024
draculR.HCGB Public Forked frommxhp75/DraculR
Public repository for the DraculR Shiny App. used to calculate haemolysis in HTS miRNA sequencing data.
HCGB-IGTP/draculR.HCGB’s past year of commit activity
HTML0GPL-3.0 1 0 0 UpdatedOct 30, 2024
XICRA Public
Small RNAseq pipeline for paired-end reads
HCGB-IGTP/XICRA’s past year of commit activity
Python 7MIT 3 8 0 UpdatedOct 18, 2024
HCGB_python_functions Public
useful python functions
HCGB-IGTP/HCGB_python_functions’s past year of commit activity
Python00 0 0 UpdatedOct 18, 2024
wanderer_v2 Public
HCGB-IGTP/wanderer_v2’s past year of commit activity
Shell00 0 0 UpdatedJun 11, 2024
XICRA.stats Public
R package for descriptive statistics of XICRA output results
HCGB-IGTP/XICRA.stats’s past year of commit activity
HTML0GPL-3.0 1 1 0 UpdatedJun 11, 2024
BacterialTyper Public
Bacterial identification pipeline
HCGB-IGTP/BacterialTyper’s past year of commit activity
Python 3MIT0 12 3 UpdatedApr 3, 2024
RNA_seq_pipe Public
HCGB-IGTP/RNA_seq_pipe’s past year of commit activity
Python 1 1 0 0 UpdatedAug 24, 2023
HCVgenotool Public
Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
HCGB-IGTP/HCVgenotool’s past year of commit activity
Python 1GPL-3.0 1 0 0 UpdatedOct 7, 2021
bioconda-recipes Public Forked frombioconda/bioconda-recipes
Conda recipes for the bioconda channel.
HCGB-IGTP/bioconda-recipes’s past year of commit activity
Shell0 3,425 0 0 UpdatedMay 18, 2021