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@Georgakopoulos-Soares-lab

Georgakopoulos-Soares-lab

Popular repositoriesLoading

  1. MAFinMAFinPublic

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Python 8

  2. ZSeekerZSeekerPublic

    Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

    Python 3

  3. MAFcounter_hashmapsMAFcounter_hashmapsPublic

    MAFcounter is a multi-threaded K-MER frequency counting program designed to work on multiple sequence alignment files

    C++ 3

  4. hdna_rdna_homo_sapienshdna_rdna_homo_sapiensPublic

    Jupyter Notebook 2

  5. dna-quasi-primesdna-quasi-primesPublic

    Repo for human quasi prime case study and manuscript for Mouratidis, Konnaris, Chantzi, and Chan et al.

    Jupyter Notebook 1

  6. nullomer_topographynullomer_topographyPublic

    Jupyter Notebook 1

Repositories

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Showing 10 of 28 repositories
  • zseeker_front Public

    Front End of ZSeeker Webpage to Submit Jobs for ZDNA region finding

    Georgakopoulos-Soares-lab/zseeker_front’s past year of commit activity
    HTML00 0 0 UpdatedMar 20, 2025
  • zseeker_sensitivity_analysis Public

    Sensitivity analysis for dinculeotide transition scores.

    Georgakopoulos-Soares-lab/zseeker_sensitivity_analysis’s past year of commit activity
    Python00 0 0 UpdatedMar 20, 2025
  • ZSeeker_docker Public

    ZSeeker web application dockerized

    Georgakopoulos-Soares-lab/ZSeeker_docker’s past year of commit activity
    Dockerfile00 0 0 UpdatedMar 20, 2025
  • zseeker_back Public

    Go Backend for ZSeeker Job submission

    Georgakopoulos-Soares-lab/zseeker_back’s past year of commit activity
    Go00 0 0 UpdatedMar 20, 2025
  • ZSeeker Public

    Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

    Georgakopoulos-Soares-lab/ZSeeker’s past year of commit activity
    Python 3GPL-3.00 0 0 UpdatedMar 20, 2025
  • MAFin Public

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Georgakopoulos-Soares-lab/MAFin’s past year of commit activity
    Python 8GPL-3.00 0 0 UpdatedMar 19, 2025
  • hairpinDB-Front-End Public

    The front end application of hairpinDB database that stores invert repeat motifs

    Georgakopoulos-Soares-lab/hairpinDB-Front-End’s past year of commit activity
    HTML00 0 0 UpdatedMar 9, 2025
  • MAFcounter-pipelines Public

    Pipelines to test scaling of MAF Counter tool and performance against other k-mer counters.

    Georgakopoulos-Soares-lab/MAFcounter-pipelines’s past year of commit activity
    Shell00 0 0 UpdatedMar 5, 2025
  • MAFcounter Public
    Georgakopoulos-Soares-lab/MAFcounter’s past year of commit activity
    C++ 10 0 0 UpdatedMar 5, 2025
  • Georgakopoulos-Soares-lab/invertiaDB-analysis’s past year of commit activity
    Jupyter Notebook0GPL-3.00 0 0 UpdatedFeb 8, 2025

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