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@EMOD-Hub

EMOD

Agent-based Disease Model

EMOD-Hub is a GitHub Organization focused on the agent-based disease model called EMOD.It is the home to the source code and many of the things that one needs to know about EMOD.

What is EMOD?

Epidemiological MODeling software (EMOD), is an agent-based model (ABM) that simulatesthe simultaneous interactions of agents in an effort to recreate complex phenomena.Each agent (such as a human or vector) can be assigned a variety of "properties"(for example, age, gender, etc.), and their behavior and interactions with one anotherare determined by using decision rules. These models have strong predictive power andare able to leverage spatial and temporal dynamics.

EMOD is also stochastic, meaning that there is randomness built into the model.Infection and recovery processes are represented as probabilistic Bernoulli randomdraws. In other words, when a susceptible person comes into contact with a pathogen,they are not guaranteed to become infected. Instead, you can imagine flipping a cointhat has a λ chance of coming up tails S(t) times, and for every person who gets a"head" you say they are infected. This randomness better approximates what happensin reality. It also means that you must run many simulations to determine theprobability of particular outcomes.

More Information

Disclaimer

The code in this repository was developed by IDM and other collaborators to supportour joint research on flexible agent-based modeling. We've made it publicly availableunder the MIT License to provide others with a better understanding of our researchand an opportunity to build upon it for their own work. We make no representationsthat the code works as intended or that we will provide support, address issues thatare found, or accept pull requests. You are welcome to create your own fork andmodify the code to suit your own modeling needs as permitted under the MIT License.

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  1. emodpy-malariaemodpy-malariaPublic

    Python workflow tools for configuring and running EMOD-Malaria

    Python 10

  2. emodpy-hivemodpy-hivPublic

    Python code for configuring and running EMOD-HIV

    Python 1 7

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