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@EMOD-Hub

EMOD

Agent-based Disease Model

EMOD-Hub is a GitHub Organization focused on the agent-based disease model called EMOD.It is the home to the source code and many of the things that one needs to know about EMOD.

What is EMOD?

Epidemiological MODeling software (EMOD), is an agent-based model (ABM) that simulatesthe simultaneous interactions of agents in an effort to recreate complex phenomena.Each agent (such as a human or vector) can be assigned a variety of "properties"(for example, age, gender, etc.), and their behavior and interactions with one anotherare determined by using decision rules. These models have strong predictive power andare able to leverage spatial and temporal dynamics.

EMOD is also stochastic, meaning that there is randomness built into the model.Infection and recovery processes are represented as probabilistic Bernoulli randomdraws. In other words, when a susceptible person comes into contact with a pathogen,they are not guaranteed to become infected. Instead, you can imagine flipping a cointhat has a λ chance of coming up tails S(t) times, and for every person who gets a"head" you say they are infected. This randomness better approximates what happensin reality. It also means that you must run many simulations to determine theprobability of particular outcomes.

More Information

Disclaimer

The code in this repository was developed by IDM and other collaborators to supportour joint research on flexible agent-based modeling. We've made it publicly availableunder the MIT License to provide others with a better understanding of our researchand an opportunity to build upon it for their own work. We make no representationsthat the code works as intended or that we will provide support, address issues thatare found, or accept pull requests. You are welcome to create your own fork andmodify the code to suit your own modeling needs as permitted under the MIT License.

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  1. emodpy-malariaemodpy-malariaPublic

    Python workflow tools for configuring and running EMOD-Malaria

    Python 6

  2. emodpy-hivemodpy-hivPublic

    Python code for configuring and running EMOD-HIV

    Python 1 1

Repositories

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Showing 9 of 9 repositories
  • EMOD-Generic-Scripts Public

    Demonstration simulations using the Generic-Ongoing branch of EMOD.

    EMOD-Hub/EMOD-Generic-Scripts’s past year of commit activity
    Python 2 2 2 0 UpdatedMar 17, 2025
  • EMOD-Generic Public

    Source files for building IDM's EMOD: epidemiology modeling software.

    EMOD-Hub/EMOD-Generic’s past year of commit activity
    C 1MIT 4 1 0 UpdatedMar 15, 2025
  • emod-api Public

    Python API for editing input and output files of EMOD

    EMOD-Hub/emod-api’s past year of commit activity
    Python 1MIT 4 0 2 UpdatedJan 30, 2025
  • EMOD Public

    Source files for building the IDM EMOD disease transmission model.

    EMOD-Hub/EMOD’s past year of commit activity
    C 97MIT 46 29 0 UpdatedJan 15, 2025
  • emodpy-malaria Public

    Python workflow tools for configuring and running EMOD-Malaria

    EMOD-Hub/emodpy-malaria’s past year of commit activity
    Python0MIT 6 10 0 UpdatedDec 19, 2024
  • emodpy-hiv Public

    Python code for configuring and running EMOD-HIV

    EMOD-Hub/emodpy-hiv’s past year of commit activity
    Python 1MIT 1 10 0 UpdatedNov 19, 2024
  • emodpy Public

    The common code for running and configuring EMOD

    EMOD-Hub/emodpy’s past year of commit activity
    Python 1MIT 2 2 0 UpdatedNov 19, 2024
  • .github Public
    EMOD-Hub/.github’s past year of commit activity
    0MIT0 0 0 UpdatedNov 11, 2024
  • EMOD-InputData Public

    Full set of input data files for use with the EMOD disease transmission model

    EMOD-Hub/EMOD-InputData’s past year of commit activity
    Python 2 3 1 0 UpdatedNov 11, 2024

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