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1. u-probeu-probePublic

   Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

   MATLAB 7 1

2. u-tracku-trackPublic

   Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting even…

   MATLAB 50 22

3. u-track3Du-track3DPublic

   Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

   MATLAB 28 3

4. u-registeru-registerPublic

   Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

   MATLAB 6 1

5. u-segment3Du-segment3DPublic

   Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.

   MATLAB 19 5

6. u-unwrap3Du-unwrap3DPublic

   Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

   Jupyter Notebook 28 1