CRI iAtlas

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shiny-iatlasshiny-iatlasPublic
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
R 48 12
ImmuneSubtypeClassifierImmuneSubtypeClassifierPublic
An R package for classification of immune subtypes, in cancer, using gene expression data.
R 46 22
iatlas-appiatlas-appPublic
R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)
R 12 3
iatlas-workflowsiatlas-workflowsPublic
cwl workflows for public tools
Common Workflow Language 2 4
iatlas-notebooksiatlas-notebooksPublic
Collection of R notebooks to enable local iAtlas plotting and functionality.
Jupyter Notebook 2 1
shiny-heatmap-viewershiny-heatmap-viewerPublic
R 1

Repositories

Showing 10 of 28 repositories

iatlasManifests Public
CRI-iAtlas/iatlasManifests’s past year of commit activity
R00 2 0 UpdatedMar 5, 2025
iatlas-app Public
R Shiny app for CRI iAtlas, an interactive web portal for exploring immuno-oncology data. (iAtlas portal 2022 and beyond)
CRI-iAtlas/iatlas-app’s past year of commit activity
R 12 3 22 0 UpdatedFeb 3, 2025
iatlasGraphQLClient Public
CRI-iAtlas/iatlasGraphQLClient’s past year of commit activity
R0 1 4 0 UpdatedJan 22, 2025
ImmuneSubtypeClassifier Public
An R package for classification of immune subtypes, in cancer, using gene expression data.
CRI-iAtlas/ImmuneSubtypeClassifier’s past year of commit activity
R 46 22 10 0 UpdatedDec 18, 2024
iatlas.modules2 Public
CRI-iAtlas/iatlas.modules2’s past year of commit activity
R0 1 0 0 UpdatedDec 17, 2024
iAtlasSchema Public
The data model schema for the iAtlas database
CRI-iAtlas/iAtlasSchema’s past year of commit activity
00 1 0 UpdatedOct 8, 2024
iatlas-notebooks Public
Collection of R notebooks to enable local iAtlas plotting and functionality.
CRI-iAtlas/iatlas-notebooks’s past year of commit activity
Jupyter Notebook 2 1 1 0 UpdatedSep 24, 2024
iatlas.modules Public
CRI-iAtlas/iatlas.modules’s past year of commit activity
R0 1 0 0 UpdatedAug 5, 2024
scRNAseq-dev Public
Code to prepare single-cell RNA-seq datasets for ingress in iAtlas
CRI-iAtlas/scRNAseq-dev’s past year of commit activity
Jupyter Notebook00 0 0 UpdatedJun 28, 2024
nf-pseudobulk Public
Nextflow pipeline to compute GSEA for pseudobulk scRNAseq
CRI-iAtlas/nf-pseudobulk’s past year of commit activity
Nextflow00 0 0 UpdatedApr 17, 2024