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@BesenbacherLab

BesenbacherLab

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  1. genovogenovoPublic

    Forked fromjbethune/kmerPaPa

    GeNovo - Identifying disease genes with de-novo mutations

    Rust

  2. kmerPaPakmerPaPaPublic

    Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.

    Python 1

  3. lionheartlionheartPublic

    LIONHEART is a method for detecting cancer from whole genome sequenced plasma cell-free DNA.

    Python 4 1

  4. kmer_counterkmer_counterPublic

    Count k-mers in regions or at SNVs or at indel breakpoints.

    Python

Repositories

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Showing 10 of 12 repositories
  • lionheart Public

    LIONHEART is a method for detecting cancer from whole genome sequenced plasma cell-free DNA.

    BesenbacherLab/lionheart’s past year of commit activity
    Python 4MIT 1 1 0 UpdatedMar 2, 2025
  • BBQ Public

    A somatic SNV variant caller that uses discordant overlapping read pairs to calculate sample-specific base error rates.

    BesenbacherLab/BBQ’s past year of commit activity
    Python0MIT0 0 0 UpdatedFeb 28, 2025
  • bbq_pipeline Public

    Snakemake workflow for the Better Base Quality (BBQ) tool

    BesenbacherLab/bbq_pipeline’s past year of commit activity
    Python0MIT0 0 1 UpdatedFeb 28, 2025
  • kmerPaPa Public

    Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.

    BesenbacherLab/kmerPaPa’s past year of commit activity
    Python 1MIT0 0 0 UpdatedJan 25, 2025
  • genovo Public Forked fromjbethune/kmerPaPa

    GeNovo - Identifying disease genes with de-novo mutations

    BesenbacherLab/genovo’s past year of commit activity
    Rust0MIT 1 0 0 UpdatedNov 25, 2024
  • UMIseq_variant_calling Public

    Detect somatic SNVs from deep targeted UMI-seq cfDNA

    BesenbacherLab/UMIseq_variant_calling’s past year of commit activity
    Python00 0 0 UpdatedSep 30, 2024
  • kmer_counter Public

    Count k-mers in regions or at SNVs or at indel breakpoints.

    BesenbacherLab/kmer_counter’s past year of commit activity
    Python0MIT0 0 0 UpdatedAug 27, 2024
  • ctDNAtool Public Forked fromHogfeldt/ctDNAtool

    A software for creating and manipulating statistics from cfDNA data

    BesenbacherLab/ctDNAtool’s past year of commit activity
    Python0 2 0 0 UpdatedFeb 11, 2024
  • mutexpect Public Forked fromjbethune/mutexpect
    BesenbacherLab/mutexpect’s past year of commit activity
    Rust0MIT 1 0 0 UpdatedFeb 9, 2023
  • ROC-utils Public
    BesenbacherLab/ROC-utils’s past year of commit activity
    Python00 0 0 UpdatedDec 9, 2022

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