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XBP1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

XBP1
Identifiers
AliasesXBP1, TREB5, XBP-1, XBP2, TREB-5, X-box binding protein 1
External IDsOMIM:194355;MGI:98970;HomoloGene:3722;GeneCards:XBP1;OMA:XBP1 - orthologs
Gene location (Human)
Chromosome 22 (human)
Chr.Chromosome 22 (human)[1]
Chromosome 22 (human)
Genomic location for XBP1
Genomic location for XBP1
Band22q12.1|22q12Start28,794,555bp[1]
End28,800,597bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for XBP1
Genomic location for XBP1
Band11 A1|11 3.61 cMStart5,470,659bp[2]
End5,475,893bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • body of pancreas

  • trachea

  • islet of Langerhans

  • olfactory zone of nasal mucosa

  • right lobe of liver

  • bone marrow cell

  • tonsil

  • rectum

  • epithelium of bronchus

  • appendix
Top expressed in
  • lacrimal gland

  • parotid gland

  • seminal vesicula

  • submandibular gland

  • epithelium of stomach

  • gastrula

  • islet of Langerhans

  • right lung lobe

  • lobe of prostate

  • vestibular membrane of cochlear duct
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7494

22433

Ensembl

ENSG00000100219

ENSMUSG00000020484

UniProt

P17861

O35426

RefSeq (mRNA)

NM_005080
NM_001079539
NM_001393999
NM_001394000

NM_001271730
NM_013842

RefSeq (protein)

NP_001073007
NP_005071

NP_001258659
NP_038870

Location (UCSC)Chr 22: 28.79 – 28.8 MbChr 11: 5.47 – 5.48 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

X-box binding protein 1, also known asXBP1, is aprotein which in humans is encoded by theXBP1gene.[5][6] TheXBP1 gene is located onchromosome 22 while a closely relatedpseudogene has been identified and localized tochromosome 5.[7] The XBP1 protein is atranscription factor that regulates theexpression of genes important to the proper functioning of theimmune system and in the cellular stress response.[8]

Discovery

[edit]

The X-box binding protein 1 (XBP1) is atranscription factor containing abZIP domain. It was first identified by its ability to bind to the Xbox, a conservedtranscriptional element in thepromoter of thehuman leukocyte antigen (HLA)DR alpha.[6]

Function

[edit]

MHC class II gene regulation

[edit]

The expression of this protein is required for the transcription of a subset ofclass II major histocompatibility genes.[9] Furthermore, XBP1 heterodimerizes with other bZIP transcription factors such asc-fos.[9]

XBP1 expression is controlled by thecytokineIL-4 and the antibodyIGHM.[10] XBP1 in turn controls the expression ofIL-6 which promotes plasma cell growth and ofimmunoglobulins inB lymphocytes.[10]

Plasma cell differentiation

[edit]

XBP1 is also essential fordifferentiation ofplasma cells (a type of antibody secreting immune cell).[10] This differentiation requires not only the expression of XBP1 but the expression of the spliced isoform of XBP1s. XBP1 regulates plasma cell differentiation independent of its known functions in the endoplasmic reticulum stress response (see below).[11] Without normal expression of XBP1, two important plasma cell differentiation-related genes, IRF4 and Blimp1, are misregulated, and XBP1-lacking plasma cells fail to colonize their long-lived niches in the bone marrow and to sustain antibody secretion.[11]

Eosinophil differentiation

[edit]

XBP1 is required foreosinophil differentiation. Eosinophils lacking XBP1 exhibit defects in granule proteins.[12]

Angiogenesis

[edit]

XBP1 acts to regulate endothelial cell proliferation through growth factor pathways,[13] leading toangiogenesis. Additionally, XBP1 protects endothelial cells fromoxidative stress by interacting withHDAC3.[14]

Viral replication

[edit]

This protein has also been identified as a cellular transcription factor that binds to an enhancer in the promoter of theHuman T-lymphotropic virus 1.[15] The generation of XBP1s during plasma cell differentiation also seems to be the cue forKaposi's sarcoma-associatedherpesvirus andEpstein Barr virus reactivation from latency.

Endoplasmic reticulum stress response

[edit]

XBP1 is part of theendoplasmic reticulum (ER) stress response and theunfolded protein response (UPR).[10] Conditions that exceed capacity of the ER provokeER stress and trigger the unfolded protein response (UPR). As a result,GRP78 is released from IRE1 to support protein folding.[16] IRE1 oligomerises and activates itsribonuclease domain through auto (self)phosphorylation. Activated IRE1 catalyses the excision of a 26 nucleotide unconventionalintron from ubiquitously expressed XBP1u mRNA, in a manner mechanistically similar to pre-tRNA splicing. Removal of this intron causes a frame shift in the XBP1 coding sequence resulting in the translation of a 376 amino acid, 40 kDa, XBP-1sisoform rather than the 261 amino acid, 33 kDa, XBP1u isoform.Moreover, the XBP1u/XBP1s ratio (XBP1-unspliced/XBP1-spliced ratio) correlates with the expression level of expressed proteins in order to adapt the folding capacity of the ER to the respective requirements.[17]

Clinical significance

[edit]

Abnormalities in XBP1 lead to a heightened ER stress and subsequently causes a heightened susceptibility for inflammatory processes that may contribute toAlzheimer's disease.[18] In thecolon, XBP1 anomalies have been linked toCrohn's disease.[19]

Asingle nucleotide polymorphism, C116G, in the promoter region ofXBP1 has been examined for possible associations withpersonality traits. None were found.[20]

Interactions

[edit]

XBP1 has been shown tointeract withestrogen receptor alpha.[21]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000100219Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020484Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: XBP1 X-box binding protein 1".
  6. ^abLiou HC, Boothby MR, Finn PW, Davidon R, Nabavi N, Zeleznik-Le NJ, et al. (March 1990). "A new member of the leucine zipper class of proteins that binds to the HLA DR alpha promoter".Science.247 (4950):1581–1584.Bibcode:1990Sci...247.1581L.doi:10.1126/science.2321018.PMID 2321018.
  7. ^Liou HC, Eddy R, Shows T, Lisowska-Grospierre B, Griscelli C, Doyle C, et al. (1991). "An HLA-DR alpha promoter DNA-binding protein is expressed ubiquitously and maps to human chromosomes 22 and 5".Immunogenetics.34 (5):286–292.doi:10.1007/BF00211992.PMID 1718857.S2CID 2939108.
  8. ^Yoshida H, Nadanaka S, Sato R, Mori K (2006)."XBP1 is critical to protect cells from endoplasmic reticulum stress: evidence from Site-2 protease-deficient Chinese hamster ovary cells".Cell Structure and Function.31 (2):117–125.doi:10.1247/csf.06016.PMID 17110785.
  9. ^abOno SJ, Liou HC, Davidon R, Strominger JL, Glimcher LH (May 1991)."Human X-box-binding protein 1 is required for the transcription of a subset of human class II major histocompatibility genes and forms a heterodimer with c-fos".Proceedings of the National Academy of Sciences of the United States of America.88 (10):4309–4312.Bibcode:1991PNAS...88.4309O.doi:10.1073/pnas.88.10.4309.PMC 51648.PMID 1903538.
  10. ^abcdIwakoshi NN, Lee AH, Vallabhajosyula P, Otipoby KL, Rajewsky K, Glimcher LH (April 2003). "Plasma cell differentiation and the unfolded protein response intersect at the transcription factor XBP-1".Nature Immunology.4 (4):321–329.doi:10.1038/ni907.PMID 12612580.S2CID 20161577.
  11. ^abHu CC, Dougan SK, McGehee AM, Love JC, Ploegh HL (June 2009)."XBP-1 regulates signal transduction, transcription factors and bone marrow colonization in B cells".The EMBO Journal.28 (11):1624–1636.doi:10.1038/emboj.2009.117.PMC 2684024.PMID 19407814.
  12. ^Bettigole SE, Lis R, Adoro S, Lee AH, Spencer LA, Weller PF, et al. (August 2015)."The transcription factor XBP1 is selectively required for eosinophil differentiation".Nature Immunology.16 (8):829–837.doi:10.1038/ni.3225.PMC 4577297.PMID 26147683.
  13. ^Zeng L, Xiao Q, Chen M, Margariti A, Martin D, Ivetic A, et al. (April 2013)."Vascular endothelial cell growth-activated XBP1 splicing in endothelial cells is crucial for angiogenesis".Circulation.127 (16):1712–1722.doi:10.1161/CIRCULATIONAHA.112.001337.PMID 23529610.
  14. ^Martin D, Li Y, Yang J, Wang G, Margariti A, Jiang Z, et al. (October 2014)."Unspliced X-box-binding protein 1 (XBP1) protects endothelial cells from oxidative stress through interaction with histone deacetylase 3".The Journal of Biological Chemistry.289 (44):30625–30634.doi:10.1074/jbc.M114.571984.PMC 4215241.PMID 25190803.
  15. ^Ku SC, Lee J, Lau J, Gurumurthy M, Ng R, Lwa SH, et al. (May 2008)."XBP-1, a novel human T-lymphotropic virus type 1 (HTLV-1) tax binding protein, activates HTLV-1 basal and tax-activated transcription".Journal of Virology.82 (9):4343–4353.doi:10.1128/JVI.02054-07.PMC 2293026.PMID 18287238.
  16. ^Kaufman RJ (May 1999)."Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls".Genes & Development.13 (10):1211–1233.doi:10.1101/gad.13.10.1211.PMID 10346810.
  17. ^Kober L, Zehe C, Bode J (October 2012). "Development of a novel ER stress based selection system for the isolation of highly productive clones".Biotechnology and Bioengineering.109 (10):2599–2611.Bibcode:2012BiotB.109.2599K.doi:10.1002/bit.24527.PMID 22510960.S2CID 25858120.
  18. ^Casas-Tinto S, Zhang Y, Sanchez-Garcia J, Gomez-Velazquez M, Rincon-Limas DE, Fernandez-Funez P (June 2011)."The ER stress factor XBP1s prevents amyloid-beta neurotoxicity".Human Molecular Genetics.20 (11):2144–2160.doi:10.1093/hmg/ddr100.PMC 3090193.PMID 21389082.
  19. ^Kaser A, Lee AH, Franke A, Glickman JN, Zeissig S, Tilg H, et al. (September 2008)."XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel disease".Cell.134 (5):743–756.doi:10.1016/j.cell.2008.07.021.PMC 2586148.PMID 18775308.
  20. ^Kusumi I, Masui T, Kakiuchi C, Suzuki K, Akimoto T, Hashimoto R, et al. (December 2005). "Relationship between XBP1 genotype and personality traits assessed by TCI and NEO-FFI".Neuroscience Letters.391 (1–2):7–10.doi:10.1016/j.neulet.2005.08.023.hdl:2115/8420.PMID 16154272.S2CID 505223.
  21. ^Ding L, Yan J, Zhu J, Zhong H, Lu Q, Wang Z, et al. (September 2003)."Ligand-independent activation of estrogen receptor alpha by XBP-1".Nucleic Acids Research.31 (18):5266–5274.doi:10.1093/nar/gkg731.PMC 203316.PMID 12954762.
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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