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Thymine

From Wikipedia, the free encyclopedia
Chemical compound of DNA
Not to be confused withThiamine orthymidine.
Thymine
Names
Preferred IUPAC name
5-Methylpyrimidine-2,4(1H,3H)-dione
Other names
5-Methyluracil
Identifiers
3D model (JSmol)
ChEBI
ChEMBL
ChemSpider
ECHA InfoCard100.000.560Edit this at Wikidata
MeSHThymine
UNII
  • InChI=1S/C5H6N2O2/c1-3-2-6-5(9)7-4(3)8/h2H,1H3,(H2,6,7,8,9) checkY
    Key: RWQNBRDOKXIBIV-UHFFFAOYSA-N checkY
  • O=C1NC(=O)NC=C1C
Properties
C5H6N2O2
Molar mass126.115 g·mol−1
Density1.223 g cm−3 (calculated)
Melting point316 to 317 °C (601 to 603 °F; 589 to 590 K)
Boiling point335 °C (635 °F; 608 K) (decomposes)
3.82 g/L[1]
Acidity (pKa)9.7
Except where otherwise noted, data are given for materials in theirstandard state (at 25 °C [77 °F], 100 kPa).
Chemical compound

Thymine (/ˈθmn/) (symbolT orThy) is one of the fournucleotide bases in thenucleic acid ofDNA that are represented by the letters G–C–A–T. The others areadenine,guanine, andcytosine. Thymine is also known as5-methyluracil, apyrimidine nucleobase. InRNA, thymine is replaced by the nucleobaseuracil. Thymine was first isolated in 1893 byAlbrecht Kossel and Albert Neumann from calfthymus glands, hence its name.[2]

Derivation

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As its alternate name (5-methyluracil) suggests, thymine may be derived bymethylation of uracil at the 5th carbon. InRNA, thymine is replaced withuracil in most cases. In DNA, thymine (T) binds toadenine (A) via two hydrogen bonds, thereby stabilizing the nucleic acid structures.

Thymine combined withdeoxyribose creates thenucleosidedeoxythymidine, which is synonymous with the termthymidine. Thymidine can be phosphorylated with up to three phosphoric acid groups, producingdTMP (deoxythymidinemonophosphate),dTDP, ordTTP (for thedi- andtri- phosphates, respectively).

One of the common mutations of DNA involves two adjacent thymines or cytosine, which, in presence ofultraviolet light, may formthymine dimers, causing "kinks" in the DNA molecule that inhibit normal function.

Thymine could also be a target for actions of 5-fluorouracil (5-FU) incancer treatment. 5-FU can be a metabolic analog of thymine (in DNA synthesis) or uracil (in RNA synthesis). Substitution of this analog inhibitsDNA synthesis in actively dividing cells.

Thymine bases are frequently oxidized tohydantoins over time after the death of an organism.[3]

Thymine imbalance causes mutation

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During growth ofbacteriophage T4, an imbalance of thymine availability, either a deficiency or an excess of thymine, causes increasedmutation.[4] The mutations caused by thymine deficiency appear to occur only at ATbase pair sites in DNA and are often AT to GCtransition mutations.[5] In the bacteriumEscherichia coli, thymine deficiency was also found to cause the same mutation.[6]

Theoretical aspects

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In March 2015, NASA scientists reported that, for the first time, complexDNA andRNAorganic compounds oflife, includinguracil,cytosine and thymine, have been formed in the laboratory underouter space conditions, using starting chemicals, such aspyrimidine, found inmeteorites. Pyrimidine, likepolycyclic aromatic hydrocarbons (PAHs), another carbon-rich compound, may have been formed inred giants or ininterstellar dust and gas clouds, according to the scientists.[7] Thymine has not been found in meteorites, which suggests the first strands of DNA had to look elsewhere to obtain this building block. Thymine likely formed within some meteorite parent bodies, but may not have persisted within these bodies due to anoxidation reaction withhydrogen peroxide.[8]

Synthesis

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Laboratory synthesis

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Thymine was first prepared by hydrolysis of the correspondingnucleoside obtained from natural sources. Interest in its direct chemical synthesis began in the early 1900s:Emil Fischer published a method starting fromurea but a more practical synthesis used methylisothiourea in acondensation reaction with ethyl formyl propionate, followed by hydrolysis of the pyrimidine intermediate:[9]

Many other preparative methods have been developed, including optimised conditions so that urea can be used directly in the reaction shown above, preferably with methyl formyl propionate.[10]

See also

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References

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  1. ^Dannenfelser, R.-M.; Yalkowsky, S.H. (December 1991)."Data base of aqueous solubility for organic non-electrolytes".Science of the Total Environment.109 (C):625–628.Bibcode:1991ScTEn.109..625D.doi:10.1016/0048-9697(91)90214-Y. Retrieved2021-11-14.
  2. ^Albrecht, Kossel; Neumann, Albert (Oct–Dec 1893)."Ueber das Thymin, ein Spaltungsproduct der Nucleïnsäure" [On thymine, a cleavage product of nucleic acid].Berichte der Deutschen Chemischen Gesellschaft.26 (3):2753–2756.doi:10.1002/cber.18930260379. Retrieved2021-11-14. p. 2754:Wir bezeichnen diese Substanz als Thymin. [We designate this substance as thymine.]
  3. ^Hofreiter, Michael; Serre, David;Poinar, Henrik N.; Kuch, Melanie;Pääbo, Svante (2001-05-01). "Ancient DNA".Nature Reviews Genetics.2 (5):353–359.doi:10.1038/35072071.PMID 11331901.S2CID 205016024.
  4. ^Bernstein, Carol; Bernstein, Harris; Mufti, Siraj; Strom, Barbara (October 1972). "Stimulation of mutation in phage T 4 by lesions in gene 32 and by thymidine imbalance".Mutat. Res.16 (2):113–119.doi:10.1016/0027-5107(72)90171-6.PMID 4561494.
  5. ^Smith, M. Diane; Green, Ronald R.; Ripley, Lynn S.;Drake, John W. (July 1973)."Thymineless mutagenesis in bacteriophage T4".Genetics.74 (3):393–403.doi:10.1093/genetics/74.3.393.PMC 1212957.PMID 4270369.
  6. ^Deutch, Charles E.; Pauling, Crellin (Sep 1974)."Thymineless mutagenesis in Escherichia coli".J. Bacteriol.119 (3):861–7.doi:10.1128/JB.119.3.861-867.1974.PMC 245692.PMID 4605383.
  7. ^Marlaire, Ruth (2015-03-03)."NASA Ames Reproduces the Building Blocks of Life in Laboratory".www.nasa.gov.NASA. Archived fromthe original on 2015-03-05. Retrieved2021-11-15.
  8. ^Tasker, Elizabeth (2016-11-10)."Did the Seeds of Life Come from Space?".blogs.scientificamerican.com.Scientific American. Retrieved2016-11-24.
  9. ^Wheeler, H.I.; Merriam, H.F. (1903)."On some condensation products of the pseudothioureas: synthesis of uracil, thymine, and similar compounds".American Chemical Journal.29 (5):478–492.
  10. ^Guo, Xianghai; Shen, Jiaxiang (2014). "An environmentally benign approach to the synthesis of thymine via hydroformylation of methyl acrylate".Monatshefte für Chemie - Chemical Monthly.145 (4):657–661.doi:10.1007/s00706-013-1128-y.S2CID 97367180.

External links

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Nucleic acid constituents
Nucleobase
Nucleoside
Ribonucleoside
Deoxyribonucleoside
Nucleotide
(Nucleoside monophosphate)
Ribonucleotide
Deoxyribonucleotide
Cyclic nucleotide
Nucleoside diphosphate
Nucleoside triphosphate
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