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Thrombomodulin

From Wikipedia, the free encyclopedia
Mammalian protein found in humans

THBD
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1ADX,1DQB,1DX5,1EGT,1FGD,1FGE,1HLT,1TMR,1ZAQ,2ADX,3GIS

Identifiers
AliasesTHBD, AHUS6, BDCA3, CD141, THPH12, THRM, TM, thrombomodulin, BDCA-3
External IDsOMIM:188040;MGI:98736;HomoloGene:308;GeneCards:THBD;OMA:THBD - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for THBD
Genomic location for THBD
Band20p11.21Start23,045,633bp[1]
End23,049,672bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for THBD
Genomic location for THBD
Band2 G3|2 73.45 cMStart148,246,386bp[2]
End148,250,108bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gingival epithelium

  • vena cava

  • right lung

  • skin of hip

  • skin of abdomen

  • skin of thigh

  • periodontal fiber

  • lower lobe of lung

  • upper lobe of left lung

  • left coronary artery
Top expressed in
  • right lung lobe

  • left lung

  • left lung lobe

  • calvaria

  • Gonadal ridge

  • ankle

  • aortic valve

  • ascending aorta

  • white adipose tissue

  • decidua
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7056

21824

Ensembl

ENSG00000178726

ENSMUSG00000074743

UniProt

P07204

P15306

RefSeq (mRNA)

NM_000361

NM_009378

RefSeq (protein)

NP_000352

NP_033404

Location (UCSC)Chr 20: 23.05 – 23.05 MbChr 2: 148.25 – 148.25 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Thrombomodulin (TM),CD141 or BDCA-3 is anintegral membrane protein expressed on the surface ofendothelial cells and serves as a cofactor forthrombin. It reducesblood coagulation by converting thrombin to an anticoagulantenzyme from a procoagulant enzyme.[5] Thrombomodulin is also expressed on humanmesothelial cell,[6]monocyte and adendritic cell subset.

Genetics and structure

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In humans, thrombomodulin is encoded by theTHBDgene.[7] The protein has a molecular mass of 74kDa, and consists of a single chain with six tandemly repeatedEGF-like domains, aSerine/Threonine-rich spacer and atransmembrane domain.[8]It is a member of theC-type lectin domain (CTLD) group 14 family.[9]

Function

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Thrombomodulin functions as acofactor in thethrombin-induced activation ofprotein C in theanticoagulant pathway by forming a 1:1 stoichiometric complex with thrombin. This raises the speed of protein C activation thousandfold. Thrombomodulin-bound thrombin has procoagulant effect at the same time by inhibiting fibrinolysis by cleavingthrombin-activatable fibrinolysis inhibitor (TAFI, aka carboxypeptidase B2) into its active form.[citation needed]

Thrombomodulin is aglycoprotein on the surface of endothelial cells that, in addition to binding thrombin, regulatesC3b inactivation by factor I. Mutations in the thrombomodulin gene (THBD) have also been reported to be associated withatypical hemolytic-uremic syndrome (aHUS).[10]

Theantigen described as BDCA-3[11] has turned out to be identical to thrombomodulin.[12] Thus, it was revealed that this molecule also occurs on a very rare (0.02%) subset of humandendritic cells called MDC2. Its function on these cells is unknown.[citation needed]

Interactions

[edit]

Thrombomodulin has been shown tointeract withthrombin.[13][14]

References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000178726Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000074743Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^IPR001491 Thrombomodulin Accessed January 19, 2012.
  6. ^Verhagen HJ, Heijnen-Snyder GJ, Pronk A, Vroom TM, van Vroonhoven TJ, Eikelboom BC, et al. (December 1996). "Thrombomodulin activity on mesothelial cells: perspectives for mesothelial cells as an alternative for endothelial cells for cell seeding on vascular grafts".British Journal of Haematology.95 (3):542–549.doi:10.1046/j.1365-2141.1996.d01-1935.x.PMID 8943899.S2CID 8417511.
  7. ^Wen DZ, Dittman WA, Ye RD, Deaven LL, Majerus PW, Sadler JE (July 1987). "Human thrombomodulin: complete cDNA sequence and chromosome localization of the gene".Biochemistry.26 (14):4350–4357.doi:10.1021/bi00388a025.PMID 2822087.
  8. ^Sadler JE (July 1997). "Thrombomodulin structure and function".Thrombosis and Haemostasis.78 (1):392–395.doi:10.1055/s-0038-1657558.PMID 9198185.S2CID 32297505.
  9. ^Khan KA, McMurray JL, Mohammed F, Bicknell R (September 2019)."C-type lectin domain group 14 proteins in vascular biology, cancer and inflammation".The FEBS Journal.286 (17):3299–3332.doi:10.1111/febs.14985.PMC 6852297.PMID 31287944.
  10. ^Delvaeye M, Noris M, De Vriese A, Esmon CT, Esmon NL, Ferrell G, et al. (July 2009)."Thrombomodulin mutations in atypical hemolytic-uremic syndrome".The New England Journal of Medicine.361 (4):345–357.doi:10.1056/NEJMoa0810739.PMC 3530919.PMID 19625716.
  11. ^Dzionek A, Fuchs A, Schmidt P, Cremer S, Zysk M, Miltenyi S, et al. (December 2000)."BDCA-2, BDCA-3, and BDCA-4: three markers for distinct subsets of dendritic cells in human peripheral blood".Journal of Immunology.165 (11):6037–6046.doi:10.4049/jimmunol.165.11.6037.PMID 11086035.
  12. ^Dzionek A, Inagaki Y, Okawa K, Nagafune J, Röck J, Sohma Y, et al. (December 2002). "Plasmacytoid dendritic cells: from specific surface markers to specific cellular functions".Human Immunology.63 (12):1133–1148.doi:10.1016/S0198-8859(02)00752-8.PMID 12480257.
  13. ^Bajzar L, Morser J, Nesheim M (July 1996)."TAFI, or plasma procarboxypeptidase B, couples the coagulation and fibrinolytic cascades through the thrombin-thrombomodulin complex".The Journal of Biological Chemistry.271 (28):16603–16608.doi:10.1074/jbc.271.28.16603.PMID 8663147.
  14. ^Jakubowski HV, Owen WG (July 1989)."Macromolecular specificity determinants on thrombin for fibrinogen and thrombomodulin".The Journal of Biological Chemistry.264 (19):11117–11121.doi:10.1016/S0021-9258(18)60437-5.PMID 2544585.

Further reading

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External links

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PDB gallery
  • 1adx: FIFTH EGF-LIKE DOMAIN OF THROMBOMODULIN (TMEGF5), NMR, 14 STRUCTURES
    1adx: FIFTH EGF-LIKE DOMAIN OF THROMBOMODULIN (TMEGF5), NMR, 14 STRUCTURES
  • 1dqb: NMR STRUCTURE OF THROMBOMODULIN EGF(4-5)
    1dqb: NMR STRUCTURE OF THROMBOMODULIN EGF(4-5)
  • 1dx5: CRYSTAL STRUCTURE OF THE THROMBIN-THROMBOMODULIN COMPLEX
    1dx5: CRYSTAL STRUCTURE OF THE THROMBIN-THROMBOMODULIN COMPLEX
  • 1zaq: FOURTH EGF-LIKE DOMAIN OF THROMBOMODULIN, NMR, 12 STRUCTURES
    1zaq: FOURTH EGF-LIKE DOMAIN OF THROMBOMODULIN, NMR, 12 STRUCTURES
  • 2adx: FIFTH EGF-LIKE DOMAIN OF THROMBOMODULIN (TMEGF5), NMR, MINIMIZED AVERAGE STRUCTURE
    2adx: FIFTH EGF-LIKE DOMAIN OF THROMBOMODULIN (TMEGF5), NMR, MINIMIZED AVERAGE STRUCTURE
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