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Tubulin beta-4A chain

From Wikipedia, the free encyclopedia
(Redirected fromTUBB4)
Protein-coding gene in the species Homo sapiens
TUBB4A
Identifiers
AliasesTUBB4A, DYT4, TUBB4, TUBB5, beta-5, tubulin beta 4A class IVa
External IDsOMIM:602662;MGI:107848;HomoloGene:55952;GeneCards:TUBB4A;OMA:TUBB4A - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for TUBB4A
Genomic location for TUBB4A
Band19p13.3Start6,494,319bp[1]
End6,502,848bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for TUBB4A
Genomic location for TUBB4A
Band17 D|17 29.66 cMStart57,387,066bp[2]
End57,394,782bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right hemisphere of cerebellum

  • Brodmann area 10

  • C1 segment

  • right frontal lobe

  • paraflocculus of cerebellum

  • middle frontal gyrus

  • anterior cingulate cortex

  • amygdala

  • caudate nucleus

  • internal globus pallidus
Top expressed in
  • primary visual cortex

  • CA3 field

  • perirhinal cortex

  • superior frontal gyrus

  • cerebellar cortex

  • entorhinal cortex

  • dentate gyrus of hippocampal formation granule cell

  • central gray substance of midbrain

  • neural layer of retina

  • supraoptic nucleus
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

10382

22153

Ensembl

ENSG00000104833

ENSMUSG00000062591

UniProt

P04350

Q9D6F9

RefSeq (mRNA)
NM_006087
NM_001289123
NM_001289127
NM_001289129
NM_001289130

NM_001289131

NM_009451

RefSeq (protein)
NP_001276052
NP_001276056
NP_001276058
NP_001276059
NP_001276060

NP_006078

NP_033477

Location (UCSC)Chr 19: 6.49 – 6.5 MbChr 17: 57.39 – 57.39 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Tubulin beta-4A chain is aprotein that in humans is encoded by theTUBB4Agene. Twotubulin beta-4 chainproteins are encoded in the human genome by thegenes TUBB4A (this entry) andTUBB4B.[5][6][7] Tubulin is the major constituent ofmicrotubules, a key components of thecytoskeleton. It binds two molecules ofGTP, one at an exchangeable site on the beta-chain and one at a non-exchangeable site on the alpha-chain.TUBB4A is preferentially and highly expressed in the central nervous system.[8]

Clinical significance

[edit]

Mutations in TUBB4A have been associated with two neurological disorders.

An R2G substitution in the autoregulatory MREI domain of TUBB4A has been identified as the cause of 'hereditary whisperingdysphonia' or DYT4.[9][10]

Ade novo D249Nmutation has been identified as the cause of a rareleukoencephalopathy,hypomyelination with atrophy of basal ganglia and cerebellum (H-ABC).[11][12]

Mutations in TUBB4A are associated withPelizaeus–Merzbacher disease.[13]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000104833Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000062591Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Hall JL, Dudley L, Dobner PR, Lewis SA, Cowan NJ (Aug 1983)."Identification of two human beta-tubulin isotypes".Molecular and Cellular Biology.3 (5):854–862.doi:10.1128/mcb.3.5.854.PMC 368608.PMID 6865944.
  6. ^Lee MG, Loomis C, Cowan NJ (Sep 1984)."Sequence of an expressed human beta-tubulin gene containing ten Alu family members".Nucleic Acids Research.12 (14):5823–5836.doi:10.1093/nar/12.14.5823.PMC 320034.PMID 6462917.
  7. ^"Entrez Gene: TUBB4 tubulin, beta 4".
  8. ^"UCSC Genome Browser: TUBB4A microarray expression".
  9. ^Hersheson J, Mencacci NE, Davis M, Macdonald N, Trabzuni D, Ryten M, Pittman A, Paudel R, Kara E, Fawcett K, Plagnol V, Bhatia KP, Medlar AJ, Stanescu HC, Hardy J, Kleta R, Wood NW, Houlden H (December 2012)."Mutations in the autoregulatory domain of β-tubulin 4a cause hereditary dystonia".Annals of Neurology.73 (4):546–553.doi:10.1002/ana.23832.PMC 3698699.PMID 23424103.
  10. ^Online Mendelian Inheritance in Man (OMIM):Dystonia 4, torsion, autosomal dominant; DYT4 - 128101
  11. ^Simons C, Wolf NI, McNeil N, Caldovic L, Devaney JM, Takanohashi A, Crawford J, Ru K, Grimmond SM, Miller D, Tonduti D, Schmidt JL, Chudnow RS, van Coster R, Lagae L, Kisler J, Sperner J, van der Knaap MS, Schiffmann R, Taft RJ, Vanderver A (May 2013)."A de novo mutation in the β-tubulin gene TUBB4A results in the leukoencephalopathy hypomyelination with atrophy of the basal ganglia and cerebellum".American Journal of Human Genetics.92 (5):767–773.doi:10.1016/j.ajhg.2013.03.018.PMC 3644625.PMID 23582646.
  12. ^Online Mendelian Inheritance in Man (OMIM):Leukodystrophy, hypomyelinating, with atrophy of the basal ganglia and cerebellum; HABC - 128101
  13. ^Shimojima, K; Okumura, A; Ikeno, M; Nishimura, A; Saito, A; Saitsu, H; Matsumoto, N; Yamamoto, T (2014)."A de novo TUBB4A mutation in a patient with hypomyelination mimicking Pelizaeus-Merzbacher disease".Brain & Development.37 (3):281–285.doi:10.1016/j.braindev.2014.05.004.PMID 24974158.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1ffx: TUBULIN:STATHMIN-LIKE DOMAIN COMPLEX
    1ffx: TUBULIN:STATHMIN-LIKE DOMAIN COMPLEX
  • 1ia0: KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM
    1ia0: KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM
  • 1jff: Refined structure of alpha-beta tubulin from zinc-induced sheets stabilized with taxol
    1jff: Refined structure of alpha-beta tubulin from zinc-induced sheets stabilized with taxol
  • 1sa0: TUBULIN-COLCHICINE: STATHMIN-LIKE DOMAIN COMPLEX
    1sa0: TUBULIN-COLCHICINE: STATHMIN-LIKE DOMAIN COMPLEX
  • 1sa1: Tubulin-podophyllotoxin: stathmin-like domain complex
    1sa1: Tubulin-podophyllotoxin: stathmin-like domain complex
  • 1tub: TUBULIN ALPHA-BETA DIMER, ELECTRON DIFFRACTION
    1tub: TUBULIN ALPHA-BETA DIMER, ELECTRON DIFFRACTION
  • 1tvk: The binding mode of epothilone A on a,b-tubulin by electron crystallography
    1tvk: The binding mode of epothilone A on a,b-tubulin by electron crystallography
  • 1z2b: Tubulin-colchicine-vinblastine: stathmin-like domain complex
    1z2b: Tubulin-colchicine-vinblastine: stathmin-like domain complex
  • 2hxf: KIF1A head-microtubule complex structure in amppnp-form
    2hxf: KIF1A head-microtubule complex structure in amppnp-form
  • 2hxh: KIF1A head-microtubule complex structure in adp-form
    2hxh: KIF1A head-microtubule complex structure in adp-form


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