Movatterモバイル変換


[0]ホーム

URL:


Jump to content
WikipediaThe Free Encyclopedia
Search

TPM1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

TPM1
Identifiers
AliasesTPM1, C15orf13, CMD1Y, CMH3, HTM-alpha, LVNC9, TMSA, HEL-S-265, tropomyosin 1 (alpha), tropomyosin 1
External IDsOMIM:191010;MGI:98809;HomoloGene:121635;GeneCards:TPM1;OMA:TPM1 - orthologs
Gene location (Human)
Chromosome 15 (human)
Chr.Chromosome 15 (human)[1]
Chromosome 15 (human)
Genomic location for TPM1
Genomic location for TPM1
Band15q22.2Start63,042,632bp[1]
End63,071,915bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for TPM1
Genomic location for TPM1
Band9 C|9 36.27 cMStart66,929,872bp[2]
End66,956,688bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • myocardium of left ventricle

  • right ventricle

  • atrium

  • right auricle of heart

  • seminal vesicula

  • apex of heart

  • cardiac muscle tissue of right atrium

  • Skeletal muscle tissue of rectus abdominis

  • saphenous vein

  • muscle layer of sigmoid colon
Top expressed in
  • ankle

  • aortic valve

  • medial head of gastrocnemius muscle

  • tail of embryo

  • ascending aorta

  • masseter muscle

  • muscle of thigh

  • triceps brachii muscle

  • temporal muscle

  • sternocleidomastoid muscle
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7168

22003

Ensembl

ENSG00000140416

ENSMUSG00000032366

UniProt

P09493

P58771

RefSeq (mRNA)
NM_000366
NM_001018004
NM_001018005
NM_001018006
NM_001018007

NM_001018008
NM_001018020
NM_001301244
NM_001301289
NM_001330344
NM_001330346
NM_001330351
NM_001365776
NM_001365777
NM_001365778
NM_001365779
NM_001365780
NM_001365781
NM_001365782

NM_001164248
NM_001164249
NM_001164250
NM_001164251
NM_001164252

NM_001164253
NM_001164254
NM_001164255
NM_001164256
NM_024427

RefSeq (protein)
NP_000357
NP_001018004
NP_001018005
NP_001018006
NP_001018007

NP_001018008
NP_001018020
NP_001288173
NP_001288218
NP_001317273
NP_001317275
NP_001317280
NP_001352705
NP_001352706
NP_001352707
NP_001352708
NP_001352709
NP_001352710
NP_001352711
NP_001018006.1

NP_001157720
NP_001157721
NP_001157722
NP_001157723
NP_001157724

NP_001157725
NP_001157726
NP_001157727
NP_001157728
NP_077745

Location (UCSC)Chr 15: 63.04 – 63.07 MbChr 9: 66.93 – 66.96 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Tropomyosin alpha-1 chain is aprotein that in humans is encoded by theTPM1gene.[5] This gene is a member of the tropomyosin (Tm) family of highly conserved, widely distributed actin-binding proteins involved in the contractile system of striated and smooth muscles and the cytoskeleton of non-muscle cells.

Structure

[edit]

Tm is a 32.7 kDa protein composed of 284 amino acids.[6] Tm is a flexible protein homodimer or heterodimer composed of twoalpha-helical chains, which adopt a bentcoiled coil conformation to wrap around the sevenactin molecules in a functional unit of muscle.[7] It is polymerized end to end along the two grooves of actin filaments and provides stability to the filaments. Human striated muscles express protein from theTPM1 (α-Tm),TPM2 (β-Tm) andTPM3 (γ-Tm) genes, with α-Tm being the predominant isoform in striated muscle. In human cardiac muscle the ratio of α-Tm toβ-Tm is roughly 5:1.[8]

Function

[edit]

Tm functions in association with the troponin complex to regulate the calcium-dependent interaction ofactin andmyosin during muscle contraction. Tm molecules are arranged head-to-tail along the actin thin filament, and are a key component in cooperative activation of muscle. A three state model has been proposed by McKillop and Geeves,[9] which describes the positions of Tm during a cardiac cycle. The blocked (B) state occurs in diastole when intracellular calcium is low and Tm blocks themyosin binding site on actin. The closed (C) state is when Tm is positioned on the inner groove ofactin; in this statemyosin is in a "cocked" position where heads are weakly bound and not generating force. Themyosin binding (M) state is when Tm is further displaced fromactin bymyosin crossbridges that are strongly-bound and actively generating force. In addition to actin, Tm bindstroponin T (TnT). TnT tethers the region of head-to-tail overlap of subsequent Tm molecules toactin.

Clinical Significance

[edit]

Mutations in TPM1 have been associated withhypertrophic cardiomyopathy (HCM),dilated cardiomyopathy andleft ventricular noncompaction cardiomyopathy (LVNC). HCM mutations tend to cluster around the N-terminal region and a primary actin binding region known as period 5.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000140416Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000032366Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Mogensen J, Kruse TA, Børglum AD (Jun 1999). "Refined localization of the human alpha-tropomyosin gene (TPM1) by genetic mapping".Cytogenetics and Cell Genetics.84 (1–2):35–36.doi:10.1159/000015207.PMID 10343096.S2CID 84901339.
  6. ^"Protein Information".Cardiac Organellar Protein Atlas Knowledgebase (COPaKB). Archived from the original on September 24, 2015. Retrieved25 May 2023.
  7. ^Brown JH, Kim KH, Jun G, Greenfield NJ, Dominguez R, Volkmann N, et al. (July 2001)."Deciphering the design of the tropomyosin molecule".Proceedings of the National Academy of Sciences of the United States of America.98 (15):8496–8501.Bibcode:2001PNAS...98.8496B.doi:10.1073/pnas.131219198.PMC 37464.PMID 11438684.
  8. ^Yin Z, Ren J, Guo W (January 2015)."Sarcomeric protein isoform transitions in cardiac muscle: a journey to heart failure".Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease.1852 (1):47–52.doi:10.1016/j.bbadis.2014.11.003.PMC 4268308.PMID 25446994.
  9. ^McKillop DF, Geeves MA (August 1993)."Regulation of the interaction between actin and myosin subfragment 1: evidence for three states of the thin filament".Biophysical Journal.65 (2):693–701.Bibcode:1993BpJ....65..693M.doi:10.1016/S0006-3495(93)81110-X.PMC 1225772.PMID 8218897.
  10. ^Tardiff JC (March 2011)."Thin filament mutations: developing an integrative approach to a complex disorder".Circulation Research.108 (6):765–782.doi:10.1161/CIRCRESAHA.110.224170.PMC 3075069.PMID 21415410.

Further reading

[edit]
PDB gallery
  • 1c1g: CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION IN THE SPERMINE-INDUCED CRYSTAL FORM
    1c1g: CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION IN THE SPERMINE-INDUCED CRYSTAL FORM
  • 1ic2: DECIPHERING THE DESIGN OF THE TROPOMYOSIN MOLECULE
    1ic2: DECIPHERING THE DESIGN OF THE TROPOMYOSIN MOLECULE
  • 1mv4: TM9A251-284: A Peptide Model of the C-Terminus of a Rat Striated Alpha Tropomyosin
    1mv4: TM9A251-284: A Peptide Model of the C-Terminus of a Rat Striated Alpha Tropomyosin
  • 2g9j: Complex of TM1a(1-14)Zip with TM9a(251-284): a model for the polymerization domain (""overlap region"") of tropomyosin
    2g9j: Complex of TM1a(1-14)Zip with TM9a(251-284): a model for the polymerization domain (""overlap region"") of tropomyosin

External links

[edit]
Human
Microfilaments
andABPs
Myofilament
Actins
Myosins
Other
Other
Intermediate
filaments
Type 1/2
(Keratin,
Cytokeratin)
Epithelial keratins
(soft alpha-keratins)
Hair keratins
(hard alpha-keratins)
Ungrouped alpha
Not alpha
Type 3
Type 4
Type 5
Microtubules
andMAPs
Tubulins
MAPs
Kinesins
Dyneins
Microtubule organising proteins
Microtubule severing proteins
Other
Catenins
Membrane
Other
Nonhuman
  1. ^Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, et al. (October 2013)."Integration of cardiac proteome biology and medicine by a specialized knowledgebase".Circulation Research.113 (9):1043–1053.doi:10.1161/CIRCRESAHA.113.301151.PMC 4076475.PMID 23965338.
Retrieved from "https://en.wikipedia.org/w/index.php?title=TPM1&oldid=1317930298"
Category:
Hidden categories:

[8]ページ先頭

©2009-2025 Movatter.jp