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TPCN1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
TPCN1
Identifiers
AliasesTPCN1, TPC1, two pore segment channel 1
External IDsOMIM:609666;MGI:2182472;HomoloGene:9905;GeneCards:TPCN1;OMA:TPCN1 - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for TPCN1
Genomic location for TPCN1
Band12q24.13Start113,221,050bp[1]
End113,298,585bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for TPCN1
Genomic location for TPCN1
Band5|5 FStart120,672,218bp[2]
End120,726,738bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right hemisphere of cerebellum

  • right lobe of thyroid gland

  • left lobe of thyroid gland

  • gastric mucosa

  • apex of heart

  • right adrenal gland

  • right adrenal cortex

  • body of pancreas

  • left adrenal cortex

  • left ovary
Top expressed in
  • lacrimal gland

  • saccule

  • otic vesicle

  • yolk sac

  • aortic valve

  • ankle

  • intestinal villus

  • molar

  • ascending aorta

  • submandibular gland
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

53373

252972

Ensembl

ENSG00000186815

ENSMUSG00000032741

UniProt

Q9ULQ1

Q9EQJ0

RefSeq (mRNA)

NM_001143819
NM_001301214
NM_017901
NM_001351346
NM_001351347

NM_145853

RefSeq (protein)

NP_001137291
NP_001288143
NP_060371
NP_001338275
NP_001338276

NP_665852

Location (UCSC)Chr 12: 113.22 – 113.3 MbChr 5: 120.67 – 120.73 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Two pore segment channel 1 (TPC1) is a humanprotein encoded by theTPCN1gene.[5] The protein encoded by this gene is anion channel. In contrast to othercalcium andsodium channels which have four homologous domains, each containing six transmembrane segments (S1 to S6), TPCN1 only contains two domains (each containing segments S1 to S6).[6][7][8]

Structure

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The structure of a TPC1ortholog fromArabidopsis thaliana has been solved by two laboratories.[9][10] The structures were solved usingX-ray crystallography and contained the fold of avoltage-gated ion channel andEF hands. Only a single voltage sensor domain appears to responsible for voltage sensing.

Filoviral infections

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Genetic knockout and pharmacological inhibition experiments demonstrate that thetwo-pore channels,TPC1 andTPC2, are required for infection by FilovirusesEbola andMarburg in mice.[11]

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000186815Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000032741Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Entrez Gene: two pore segment channel 1".
  6. ^Hirosawa M, Nagase T, Ishikawa K, Kikuno R, Nomura N, Ohara O (October 1999)."Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain".DNA Research.6 (5):329–36.doi:10.1093/dnares/6.5.329.PMID 10574461.
  7. ^Ishibashi K, Suzuki M, Imai M (April 2000). "Molecular cloning of a novel form (two-repeat) protein related to voltage-gated sodium and calcium channels".Biochemical and Biophysical Research Communications.270 (2):370–6.doi:10.1006/bbrc.2000.2435.PMID 10753632.
  8. ^Clapham DE, Garbers DL (December 2005). "International Union of Pharmacology. L. Nomenclature and structure-function relationships of CatSper and two-pore channels".Pharmacological Reviews.57 (4):451–4.doi:10.1124/pr.57.4.7.PMID 16382101.S2CID 35096827.
  9. ^Guo J, Zeng W, Chen Q, Lee C, Chen L, Yang Y, Cang C, Ren D, Jiang Y (March 2016)."Structure of the voltage-gated two-pore channel TPC1 from Arabidopsis thaliana".Nature.531 (7593):196–201.Bibcode:2016Natur.531..196G.doi:10.1038/nature16446.PMC 4841471.PMID 26689363.
  10. ^Kintzer AF, Stroud RM (March 2016)."Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana".Nature.531 (7593):258–62.Bibcode:2016Natur.531..258K.doi:10.1038/nature17194.PMC 4863712.PMID 26961658.
  11. ^Sakurai Y, Kolokoltsov AA, Chen CC, Tidwell MW, Bauta WE, Klugbauer N, Grimm C, Wahl-Schott C, Biel M, Davey RA (February 2015)."Ebola virus. Two-pore channels control Ebola virus host cell entry and are drug targets for disease treatment".Science.347 (6225):995–8.doi:10.1126/science.1258758.PMC 4550587.PMID 25722412.

Further reading

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External links

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Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders
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